LOC111197648


Basic Information

Item Value
gene id LOC111197648
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46578287 ~ 46599431 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002652516.1
AGCAGTAATCTCCCAGAACACAAgtggaaaaaaacatggagTGAATCTTCCTTCAGCAGTGCAAATGGAGAAATAGCGCTGCCTTATGGATTAGACTTCTCAGAGTGAAAAGGCTAGGGAACTGCAGCAAAATGAGCCGACTCAAGCCTCCAGAAGATGGGTGGCCCACGCACTGCCACTCCCCAAGGACACAGGGACGGGTTTCTACTagattgctgtgaggatttgttaGCATTCAGGAAAAAGAGCATTTGTATTACCAGGATGTTGGATTATCATtatcccacctcatccccaactcattccaaagGTATTGGATGGTGCTCCATCATTACAGataatgggggggggggggggggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002652516.1 True 360 lncRNA 0.48 3 46578287 46599431

Neighbor

gene id symbol gene type direction distance location
LOC103047706 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 coding downstream 63474 46512639 ~ 46514813 (-)
peli2 peli2,LOC103047193,LOC108410474,LOC108258111,LOC100334245,LOC107567396,LOC107574485,LOC106571579 coding downstream 78620 46480645 ~ 46499667 (-)
actr10 actr10,LOC106608088,LOC106571574 coding downstream 161866 46410456 ~ 46416421 (-)
LOC107197829 NA coding downstream 173674 46396499 ~ 46404613 (-)
LOC103044046 NA coding downstream 183220 46387659 ~ 46395067 (-)
LOC103022574 mdga2,LOC108411484,LOC108257548,LOC107704381 coding upstream 46206 46645637 ~ 46936593 (-)
LOC103045279 cx43,LOC107675226,LOC107602186,LOC107716890,LOC107598086 coding upstream 490118 47089549 ~ 47094904 (-)
LOC103044065 LOC108424424 coding upstream 496665 47096096 ~ 47101631 (-)
LOC103044766 LOC103044766,LOC108424467,LOC108257939 coding upstream 522737 47122168 ~ 47124470 (-)
LOC103043748 LOC108424468 coding upstream 527046 47126477 ~ 47128782 (-)
G26666 NA non-coding downstream 169223 46395961 ~ 46409064 (-)
G26663 NA non-coding downstream 216369 46361718 ~ 46361918 (-)
G26605 NA non-coding downstream 416188 46076136 ~ 46162099 (-)
G26612 NA non-coding downstream 511099 46066648 ~ 46067188 (-)
G26564 NA non-coding downstream 728695 45847617 ~ 45849592 (-)
G26751 NA non-coding upstream 62688 46662119 ~ 46663963 (-)
G26771 NA non-coding upstream 505884 47105315 ~ 47106324 (-)
G26783 LOC108424466 non-coding upstream 518151 47117582 ~ 47120006 (-)
G26810 NA non-coding upstream 599433 47198864 ~ 47199418 (-)
G26826 NA non-coding upstream 738990 47338421 ~ 47347966 (-)
fkbp3 fkbp3 other downstream 42452 46533695 ~ 46535835 (-)
G26695 prpf39,LOC107729032 other downstream 52291 46518871 ~ 46525996 (-)
naa30 naa30,LOC108270341 other downstream 142362 46427417 ~ 46435925 (-)
G26636 LOC108411685,LOC108258103,LOC101066055,LOC105902101 other downstream 285481 46292087 ~ 46292806 (-)
G26588 NA other downstream 642665 45935153 ~ 45935622 (-)
G26754 NA other upstream 104916 46704347 ~ 46738736 (-)
LOC103039734 LOC108424428 other upstream 1618075 48217506 ~ 48324662 (-)
pln NA other upstream 1678831 48278262 ~ 48288736 (-)
G27145 NA other upstream 2287563 48886994 ~ 48891028 (-)
G27258 NA other upstream 3039328 49638759 ~ 49639444 (-)

Expression


Co-expression Network