RNA id: XM_007255373.3


Basic Information

Item Value
RNA id XM_007255373.3
length 2217
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC103039734
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48217506 ~ 48324662 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTTAATCCGGGTCCGGGTGAGGGGGCAGGTGGGCAGGGCAGGTATGGCGCATCCAGACACCTGGGAGAGCGAGGGTCTGCTGGAGCAGTTCTCCAGACTGTCCGCGGTCGCAGAGGAGGATCTGACCCCAGGAGAAGGAGGTGAGGGCGGTGGAGAGTCTGTGGTGGAGGGTGAGGGCAGCGCCGGGATGCTGTGTCTGAGTGATGAGGTTCTGCTGGTGATCCTGAGGTTCCTGGACCCCATGTCTCTGCTGAGAGCGGGCAGCACCTGCAGGCCGCTCTTCAGAGTCTGCTCCTGTAACTCGCTCTGGACCAGACACTTTCGGGATTCATTTCAGGTCAGCCTTCCAAATAGCACAGCTGGTTCTGTCGTCCCGGCCAAGACTGCTTTCCGCTTGGTGTTCATGTGGAGAACTCTCTTCCGGAACATTCACTGTAACCGCTCGCTTCAGGAGAAGCTCTTCACTGAATTCCCCTTTCCGCCTCGTTCTTACTGGACCCAGTGGCTGGTGCTGGAGGAGCGCGTACCCCTGCCCTCAGCTAGGCTTTCATGCAGTGATGTGGAGAAGCTCTGGGGCATCTCCAGAGACCTCTTCAAAGAGAAGCTTCAGGagaaagaagaaggtgACACCCTCAAATTTGAATGGAGGGAGTTGTTCAGCTTTGCCCTCAGCCATCACGGCAGTGTAGCGATGGTATTCCAGCACGTTCTTGCCCAACACCAAAGCAGCGACCACTCTGAGCTGGAGTCTATGTATCATCAGTACACACAGTGCCGGTTTCAGTGGCTCTTCACCTACTGGCTTTTCCGGCAGCCCTCGCCATTGAACCGACAGCTGCGGTCCATCTTCCTTCAGTGGAGGAAGCACAGCAAGAAGAAAGTGGCTACGTGGGGAGAAACGTTGTGTGACGTGAGATACCTCGCCTCTCTCCATCCAATCACTAGTGACTACTGGAGGGGCCGCCTGGCTCAGGGAGACGAGAACGTGGGTATTCATACAGTGGGAAACTACTTCTCCATGTGCAAGTCACTGGTGGCATGGATTCTGGGCCGTGACTGGGGCAAATTGAAGCGCAGAAAGGTTTATGAGGACACTCTGGATGGTGTGTACATGCTCCTGAAGAGGGAGATGCGGGAGAGCCTGGTAGAGCATGAGCGCTTCTGGCAGGTGGCTAAAGTCCAGATGAGCAGAGTGTGCACCTTGGAGGAGACAGCTACCAATTACGTCAACTGGAAGATGATCGAGACGCTTCCGTATTACAAGTTGTACTTGGTGTCTGGCAATGGCGTCTACCTGGAGCACGTGAAGGGTTTTCTGCGCAGGAAGAGAATGGTCCATAACTGGATCTTTCTAGATGAGAACGCCTGGCTGAGAGAGCTGCTGCCAGATGAGCTCTATACCCTGCTGGAGTTCGACACCAAGATCGCTCAAGAAAGTTTACATGGGAACTCTGGCAGTGCGAAGCTGAGCAGACTGATCTGGCTGTATCTTCACTCTGGTCAGCAGCTCTATCTGGAGGCGGTGAAGGAGCTGGTCCTGCAGTGCGCTCAAACCCACTTCAACTACCTCACTGCCAGCGCTCTCTCCCAGAGACTGTGGAGACAACCTGTGGCTTAGACCAGACCAGACTCCTCCCACCTCACCCTGGACCAACTGCTTTCTAATaagcctatatatatatttttaaataatgttttaaagcttttagGCAAACAAAACAcgatttgtgtgtatttttataatcttaattttaaatttgagatttttttatttttttttttttaattggtccagtttttgtttttttatttttgagacTGGACTTTAGTTTACCTTTTGCTTGAGGGTCTGTTTGAGAGGGCTACAGGCTTGAAAGACTgaaatcacttttttatatatttatttttttatctgcacTCATAACTgctagaaaagttttttttttttttgtgtgtgtgtatatagattTTAGGTAAGGATTTAAATGAGGGCTATGAATAATCTGCTGTTCCACCTAAATTGCCTTTTAATGGTTGTGATGTTTTAGCTTTGATGGCTGATCTGGAACAGATACACTCATGGGAAAACAAGACaggtttattaatatttattttttttacagctgaaGAAAGATGATTACTTGTACGTTTTTTATTGAAATGCAAAAACATCGCATTAGCCCTGAGACTATTAAAAGTCCTTTCATAATCTACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36222 lncRNA downstream 24295 48278262 ~ 48288736 (-) False pln
TU36223 lncRNA downstream 24295 48278262 ~ 48288736 (-) False pln
TU36224 lncRNA downstream 24295 48278262 ~ 48288736 (-) False pln
TU36218 lncRNA downstream 53339 48259382 ~ 48259692 (-) True G26953
TU36196 lncRNA downstream 97773 48212095 ~ 48215258 (-) False G26944
TU36312 lncRNA upstream 68459 48393121 ~ 48394409 (-) True LOC111188411
XR_002648486.1 lncRNA upstream 68503 48393165 ~ 48394416 (-) False LOC111188411
XR_002648479.1 lncRNA upstream 111114 48435776 ~ 48438690 (-) True LOC111188398
TU36328 lncRNA upstream 227574 48552236 ~ 48552562 (-) True G27029
TU36329 lncRNA upstream 228170 48552832 ~ 48553160 (-) True G27030
XM_022662076.1 mRNA downstream 24321 48278268 ~ 48288710 (-) True pln
XM_022662065.1 mRNA downstream 24323 48278268 ~ 48288708 (-) False pln
XM_022662069.1 mRNA downstream 24323 48282483 ~ 48288708 (-) False pln
XM_007255385.2 mRNA downstream 1173713 47134735 ~ 47139318 (-) True hsdl1
XM_007255529.3 mRNA downstream 1178730 47129070 ~ 47134301 (-) True LOC103033231
XM_022662051.1 mRNA upstream 1223 48325885 ~ 48446366 (-) True slc35f1
XM_022662047.1 mRNA upstream 120715 48445377 ~ 48539382 (-) True cdk19
XM_007254909.2 mRNA upstream 237842 48562504 ~ 48576593 (-) True ppil4
XM_007254910.3 mRNA upstream 398338 48723000 ~ 48735370 (-) False katna1
XM_007254911.3 mRNA upstream 398338 48723000 ~ 48735113 (-) True katna1
TU35957 other downstream 1574295 46704347 ~ 46738736 (-) True G26754
TU35943 other downstream 1777278 46533695 ~ 46535753 (-) True fkbp3
TU35877 other downstream 1787035 46523648 ~ 46525996 (-) True G26695
TU35879 other downstream 1791788 46518871 ~ 46521243 (-) False G26695
XR_001518806.2 other downstream 1877106 46427417 ~ 46435925 (-) False naa30
TU36479 other upstream 562332 48886994 ~ 48891028 (-) True G27145
XR_002649726.1 other upstream 1110250 49434912 ~ 49435653 (-) True LOC111191920
TU36629 other upstream 1314097 49638759 ~ 49639444 (-) True G27258
TU36630 other upstream 1314097 49638759 ~ 49639444 (-) False G27258
TU36802 other upstream 2157227 50481889 ~ 50531639 (-) True G27400

Expression Profile