RNA id: TU36218


Basic Information

Item Value
RNA id TU36218
length 251
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id G26953
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48259382 ~ 48259692 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tccgcacctaaaacctcccgcgatgaagcaaaaccgaccctaaccgagcggatctccgctccgcacctaaaacccgcccgcgatgaaacgaaaccgaccctaaccgagcggatctccgctccgcacctaaaacccgcccgcgatgaaacgaaaccgaccctaaccgagcggatctccgctccgcacctaaaacccgcccgcgatgaaacgaaaccgaccctaacccgCTCGTTTTCATCGCAGGACATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36190 lncRNA downstream 44124 48212095 ~ 48215258 (-) False G26944
TU36196 lncRNA downstream 44124 48212095 ~ 48215258 (-) False G26944
TU36192 lncRNA downstream 45565 48212095 ~ 48213817 (-) False G26944
TU36193 lncRNA downstream 45565 48212095 ~ 48213817 (-) False G26944
TU36197 lncRNA downstream 45565 48212095 ~ 48213817 (-) False G26944
TU36222 lncRNA upstream 18570 48278262 ~ 48288736 (-) False pln
TU36223 lncRNA upstream 18570 48278262 ~ 48288736 (-) False pln
TU36224 lncRNA upstream 18570 48278262 ~ 48288736 (-) False pln
TU36312 lncRNA upstream 133429 48393121 ~ 48394409 (-) True LOC111188411
XR_002648486.1 lncRNA upstream 133473 48393165 ~ 48394416 (-) False LOC111188411
XM_007255385.2 mRNA downstream 1120064 47134735 ~ 47139318 (-) True hsdl1
XM_007255529.3 mRNA downstream 1125081 47129070 ~ 47134301 (-) True LOC103033231
XM_007255386.3 mRNA downstream 1130600 47126477 ~ 47128782 (-) True LOC103043748
XM_007255389.3 mRNA downstream 1134912 47122168 ~ 47124470 (-) True LOC103044766
XM_007255387.3 mRNA downstream 1157751 47096096 ~ 47101631 (-) True LOC103044065
XM_022662076.1 mRNA upstream 18576 48278268 ~ 48288710 (-) True pln
XM_022662065.1 mRNA upstream 18576 48278268 ~ 48288708 (-) False pln
XM_022662069.1 mRNA upstream 22791 48282483 ~ 48288708 (-) False pln
XM_007255373.3 mRNA upstream 53339 48313031 ~ 48324662 (-) True LOC103039734
XM_022662051.1 mRNA upstream 66193 48325885 ~ 48446366 (-) True slc35f1
TU35957 other downstream 1520646 46704347 ~ 46738736 (-) True G26754
TU35943 other downstream 1723629 46533695 ~ 46535753 (-) True fkbp3
TU35877 other downstream 1733386 46523648 ~ 46525996 (-) True G26695
TU35879 other downstream 1738139 46518871 ~ 46521243 (-) False G26695
XR_001518806.2 other downstream 1823457 46427417 ~ 46435925 (-) False naa30
TU36479 other upstream 627302 48886994 ~ 48891028 (-) True G27145
XR_002649726.1 other upstream 1175220 49434912 ~ 49435653 (-) True LOC111191920
TU36629 other upstream 1379067 49638759 ~ 49639444 (-) True G27258
TU36630 other upstream 1379067 49638759 ~ 49639444 (-) False G27258
TU36802 other upstream 2222197 50481889 ~ 50531639 (-) True G27400

Expression Profile