G27219


Basic Information

Item Value
gene id G27219
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 49221786 ~ 49224322 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU36579
CAGTAGTAATTACCATACACTACCTGTCACAATTTGATTTATGACCCCTGATTTATGACTTGATTTATGATCTTTTGATTTATGATTTACTTTATGGCATGCTGACTGACAAGGCTTGGGACATGTCTGACTGACAGGCTGATATGTTTATTACCCACCAGCAACCCCTCACCCTTGTCTTCTGCCGCAGACGTCACCTCACACCCACCAGGATGTAACTTGTTTTACGACCTACACAGGCACCCCTAAACAAACACCAGCCATCACTATcgGTAGGAGTGGTCTACGTGGCCTTGTATATAGATGGCTCACAACTCTGTTGGAGGTGCCCCATTCAGACGCTAGCCTGAAAAAACCACGATGGACGCAAGCTTTCTTGGTATTTTCTTGGTCTAGGAACCTGTGAGCTGGAAACAATCCAAGCCGTTCAAAATATTGAAGGTTTATCTCAACTTTGTGAGGAGTCTGTGAACACATCGGCGCATGTGGACCCTCTTGCAGGTCTAAAACGCTTAGTGGATAGTATCACGCCACCCGGATTCGACAATTTGTACAAACAGCCAAAAAATCCTCAACTACAGGATATAACCAACAACAGCGGATACAGGAGAGCCTTTAAGCCAAACTTAACGAGCAGTCCGGAGGTGTTGCTTGGTAAACGTTGCAACAGGGGACCATCTTCAAGCAGAAAACGCATCAGGCTGGAAGACAGCTGCATACTGTTAGATACAGATTTGAACAACGCTGGACAGTCTACGAATGGAGAAAGTGTGTTGCACAATGATGTCCAGGATGTTTTAAACAAGGACGAATGGTCGGAGGATTTGACGGACATCTGGGATCAGAACAGTTTCAGCGAACCAGTCGAAAAAACTGTTGCTGGCGCACCACCGAATGTTGGAATAAACGCTTCggacaaacacagagacactgACGCAAATGAGTTACGATCAAACCAAGAGCATGAGCATCAAGATCAGGTAGGACCCGATGGTGATTTAAACAGTATTGGCGAGGTTTTAACTGTTCTAAGACAGATTTctgaagaaaacagaaaaatattgcTAGATAACAAAACAATCACAGAATCAAACAGAAAACTAACAGAAGCTTGTATTAAATCTTCCCAAGACAACGAAAGGTTGTCACAGTTAAATGCAAAGATATCTCAAGAAAATTTGAACAATTTAATTGAGCTACGTAGACAATCTGCCATTAACCGTAGACATGAAAAAGGTATTCAAGAGATACACAAACAACTAAATATATATCTGGATGAATTTAGAAAATTTGATATGTCTGGTAATGTGTCAAAAGATCAATTCAA
>TU36585
CAGTAGTAATTACCATACACTACCTGTCACAATTTGATTTATGACCCCTGATTTATGACTTGATTTATGATCTTTTGATTTATGATTTACTTTATGGCATGCTGACTGACAAGGCTTGGGACATGTCTGACTGACAGGCTGATATGTTTATTACCCACCAGCAACCCCTCACCCTTGTCTTCTGCCGCAGACGTCACCTCACACCCACCAGGATGTAACTTGTTTTACGACCTACACAGGCACCCCTAAACAAACACCAGCCATCACTATcgGTAGGAGTGGTCTACGTGGCCTTGTATATAGATGGCTCACAACTCTGTTGGAGGTGCCCCATTCAGACGCTAGCCTGAAAAAACCACGATGGACGCAAGCTTTCTTGGTACTGTGAGCTGGAAACAATCCAAGCCGTTCAAAATATTGAAGGTTTATCTCAACTTTGTGAGGAGTCTGTGAACACATCGGCGCATGTGGACCCTCTTGCAGGTCTAAAACGCTTAGTGGATAGTATCACGCCACCCGGATTCGACAATTTGTACAAACAGCCAAAAAATCCTCAACTACAGGATATAACCAACAACAGCGGATACAGGAGAGCCTTTAAGCCAAACTTAACGAGCAGTCCGGAGGTGTTGCTTGGTAAACGTTGCAACAGGGGACCATCTTCAAGCAGAAAACGCATCAGGCTGGAAGACAGCTGCATACTGTTAGATACAGATTTGAACAACGCTGGACAGTCTACGAATGGAGAAAGTGTGTTGCACAATGATGTCCAGGATGTTTTAAACAAGGACGAATGGTCGGAGGATTTGACGGACATCTGGGATCAGAACAGTTTCAGCGAACCAGTCGAAAAAACTGTTGCTGGCGCACCACCGAATGTTGGAATAAACGCTTCggacaaacacagagacactgACGCAAATGAGTTACGATCAAACCAAGAGCATGAGCATCAAGATCAGGTAGGACCCGATGGTGATTTAAACAGTATTGGCGAGGTTTTAACTGTTCTAAGACAGATTTctgaagaaaacagaaaaatattgcTAGATAACAAAACAATCACAGAATCAAACAGAAAACTAACAGAAGCTTGTATTAAATCTTCCCAAGACAACGAAAGGTTGTCACAGTTAAATGCAAAGATATCTCAAGAAAATTTGAACAATTTAATTGAGCTACGTAGACAATCTGCCATTAACCGTAGACATGAAAAAGGTATTCAAGAGATACACAAACAACTAAATATATATCTGGATGAATTTAGAAAATTTGATATGTCTGGTAATGTGTCAAAAGATCAATTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36579 True 1327 lncRNA 0.42 6 49221786 49224322
TU36585 False 1309 lncRNA 0.44 6 49221786 49224322

Neighbor

gene id symbol gene type direction distance location
map3k7 map3k7 coding downstream 74303 49119962 ~ 49147483 (-)
bach2 bach2 coding downstream 145892 48909552 ~ 49075894 (-)
mdn1 mdn1,LOC107755265,LOC107601919,LOC107737285,LOC107597457 coding downstream 370141 48746900 ~ 48851645 (-)
katna1 katna1,LOC107755263,LOC107683938,LOC107665349,LOC107737259,LOC107597454 coding downstream 486416 48723000 ~ 48735370 (-)
ppil4 ppil4 coding downstream 645193 48562504 ~ 48576593 (-)
LOC111191920 NA coding upstream 210590 49434912 ~ 49435653 (-)
epha7 epha7 coding upstream 583772 49808094 ~ 49941006 (-)
LOC103033334 NA coding upstream 1349438 50573760 ~ 50580682 (-)
map3k5 map3k5,LOC107653159,LOC107660504 coding upstream 1358025 50582347 ~ 50703118 (-)
ankrd6 ankrd6 coding upstream 1555012 50779334 ~ 50855315 (-)
G27201 NA non-coding downstream 192102 49028171 ~ 49029684 (-)
G27139 NA non-coding downstream 344307 48858475 ~ 48877479 (-)
G27136 NA non-coding downstream 349322 48854665 ~ 48872464 (-)
G27081 NA non-coding downstream 476442 48745061 ~ 48745344 (-)
G27062 NA non-coding downstream 544946 48675753 ~ 48676840 (-)
G27228 NA non-coding upstream 93130 49317452 ~ 49321378 (-)
G27234 NA non-coding upstream 165529 49389851 ~ 49393820 (-)
G27237 NA non-coding upstream 208353 49432675 ~ 49433839 (-)
G27240 NA non-coding upstream 237175 49461497 ~ 49461916 (-)
G27262 NA non-coding upstream 533309 49757631 ~ 49757830 (-)
G27145 NA other downstream 330758 48886994 ~ 48891028 (-)
LOC103039734 LOC108424428 other downstream 897124 48217506 ~ 48324662 (-)
pln NA other downstream 933050 48278262 ~ 48288736 (-)
G26754 NA other downstream 2483050 46704347 ~ 46738736 (-)
fkbp3 fkbp3 other downstream 2685951 46533695 ~ 46535835 (-)
G27258 NA other upstream 414437 49638759 ~ 49639444 (-)
G27400 NA other upstream 1257567 50481889 ~ 50531639 (-)
LOC103034285 NA other upstream 1298577 50522899 ~ 50539672 (-)
pcmt1 pcmt1 other upstream 1500741 50725063 ~ 50740434 (-)
LOC103040973 NA other upstream 3069558 52293880 ~ 52321920 (-)

Expression


Co-expression Network