G28386


Basic Information

Item Value
gene id G28386
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 55389865 ~ 55390330 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU38109
CTGACATCGGTGTAATGATGTATGTAGATTTTGTGAAACTGTTGAGGCAGCAGCTCATTATCCATGGCAGTCATATCAGCCATCATCTCCAAGGCAACAAATCGAGGGAGTATAGACAACACCAAACGTTCTTGCCTGTCTCTGGTTTTCTGTCTCAAGCTTCATCCGGCCCTGGATGCAGCGGCGTGTCTCGAGGAAGGCTTGTCTCTGAGCTCGGTCGGTCAGGTAATGTATGAAAAGTCCTGCTGTGTTCATACTCATGTACAGCAAGGCCTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38109 True 278 lncRNA 0.48 2 55389865 55390330

Neighbor

gene id symbol gene type direction distance location
LOC103024257 efr3b,LOC108424480,LOC107678842,LOC107697142,LOC107549699 coding downstream 22543 55314960 ~ 55367322 (-)
LOC103025507 NA coding downstream 131347 55244116 ~ 55258518 (-)
trnal-cag_7 NA coding downstream 545721 54844062 ~ 54844144 (-)
rfx6 rfx6,LOC107678847,LOC104962418 coding downstream 563340 54815778 ~ 54826525 (-)
vgll2 vgll2 coding downstream 608485 54772275 ~ 54781380 (-)
LOC103021751 NA coding upstream 57796 55448126 ~ 55460855 (-)
ttc32 ttc32 coding upstream 71704 55462034 ~ 55465720 (-)
laptm4a laptm4a coding upstream 96282 55486612 ~ 55494508 (-)
LOC103035409 NA coding upstream 122429 55512759 ~ 55528667 (-)
churc1 churc1,LOC107659227,LOC107721357,LOC107555763 coding upstream 171240 55561570 ~ 55564747 (-)
G28315 NA non-coding downstream 142262 55246766 ~ 55247603 (-)
G28306 NA non-coding downstream 218256 55171134 ~ 55171609 (-)
G28299 LOC103032688 non-coding downstream 230728 55157318 ~ 55159137 (-)
G28282 NA non-coding downstream 310200 55074001 ~ 55079665 (-)
G28265 igf2r non-coding downstream 518557 54867447 ~ 54871308 (-)
G28390 LOC108424481,LOC108257757 non-coding upstream 11406 55401736 ~ 55405004 (-)
G28394 parp1,LOC107678834 non-coding upstream 28357 55418687 ~ 55423743 (-)
G28395 NA non-coding upstream 33966 55424296 ~ 55425649 (-)
G28505 NA non-coding upstream 245195 55635525 ~ 55636660 (-)
G28568 NA non-coding upstream 495993 55886323 ~ 55890103 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other downstream 75686 55266091 ~ 55314179 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other downstream 766025 54556888 ~ 54623840 (-)
LOC103040805 NA other downstream 1334168 54049795 ~ 54055697 (-)
akap7 NA other downstream 1482453 53742880 ~ 53907412 (-)
trnal-cag NA other downstream 1767507 53622071 ~ 53622358 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other upstream 41751 55432081 ~ 55444669 (-)
LOC111189318 NA other upstream 109570 55499900 ~ 55501760 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other upstream 212540 55602870 ~ 55606886 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 244202 55634532 ~ 55641375 (-)
G28536 NA other upstream 425542 55815872 ~ 55816598 (-)

Expression


Co-expression Network