G28394 (parp1,LOC107678834)


Basic Information

Item Value
gene id G28394
gene name parp1,LOC107678834
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 55418687 ~ 55423743 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU38119
TTTAGGGAGAATAAAAAGCATTATTTGCAACTGTACTTGAAGGTAAACAACAGCAGGTGGCACTGCAGGATCTTGGTACATACCACTGGCGCCTCGGGTGGAGCAATACGCAGACCCTGAGATAGGATACCCGCATAATTGGTGGTGCGGGAGCCGTGCCACAGCAGCTGCCGATTGGGCAATTCTTTGAAGGGACGATAGCGTTGGTATTCACCCTCACGATCAATCTTAAAGATcTCTTCAACTTCGAGTGTGTAAGTATTATGAGTTGAAGCATGTGTGTTCTTTACATACTGGTGGATCAGCTGAGCCTCTTCTGATGAGTTATCAAGAACCTCAATCTTAGTTTTGAGTTTCTCATAGTTAATGTCAATAGgatcttttttgttatcttCAGCTCCTCCACGTAACAGGCTGTAGGCCACTTCAATGTCCAGAAGATTGTCCAGCATCTGAACTTTAGTCTGGATGTAGTCCAAGTTACTTAACAGGGGAGGTTTCTTCATGCCGAAGTCGTGTGGGATCAGAGTGTAGAAGCGGTTAGACAAGTCCAGGATCATAGGCTCTGGAGCATTGTCAGAAACAGCCTGCTGAACTTCACTGAGGAGAGAATAAGCACTCTGGATTTGCCTCTTACTCAGTTTTCCCAAAGGCATTTTCTGCAGGTCGATCTCAAACTCCACCATGGCTTTCTTCATGCTCTCCACATCAAAGATCATTCGGATGAGCTCTTGGATTGGTTTAGCTAGTTGAGACTTGGTGCCTGAGCTGGCGGCCAGTTTCTTCACTGCCTCCTCATCCTGCCCATAATCAATCTCAAGAGGGTAAAATTTGTTGGGGTATTTAGTGAAGCTACTTGAGGTCCATGAATTGCCTGTCTTTTCTTCATACACGCTTCGGAAGTTGTCCATGGCAGAGTTCTTGTCATAAAACTTATCCAGTTTGTTTCCACCGATAGTGGTTCCCACTCGTCCCCATGACCTGAACACCCAGTACCGTTTCTGGACGTCGTCCTCCAGCAGCTGGAGTTTGTAGTAAGAGTTGGTGCCTCTGACAATGTCCACTAGACCCAGAGTAGCACTGTGGATCTTGCCATTCTGATCCAAAACATGAGCGCAGTTCCCCAAACCTGAGTCTGGGTCGACTGCAGCTCCACCTTTAACAGTCAACTTCATCTTCTTTGACTTGCTACTacCTTCTTCCTCGTTGCTCCTCCCACTGCTCTTTGAGGACATGGCTCCAGTTGACTTAGAAGCTCCTGATGGGGCTGGAGCTGGACCCTCCAATTTAACCTCCGCTCCCCAGGGCGAGATACCATGCAGGGAGATGAGCTCCTGCAGGGCTTTGCCTGAGGACTTAATATCGCTGAGGAAATCTTCAGACACTACCCGCACCCCAGCGTCTCTCACCTCCTCCATCTTCTTACTCATCTT

Function

symbol description
parp1 Predicted to enable NAD+ ADP-ribosyltransferase activity and protein ADP-ribosylase activity. Predicted to be involved in double-strand break repair and protein poly-ADP-ribosylation. Predicted to act upstream of or within protein ADP-ribosylation. Predicted to be located in chromosome and nucleus. Predicted to be active in nucleolus. Human ortholog(s) of this gene implicated in several diseases, including arthritis; bacterial meningitis; neurodegenerative disease (multiple); stomach carcinoma; and type 2 diabetes mellitus. Orthologous to human PARP1 (poly(ADP-ribose) polymerase 1).

NR:

description
PREDICTED: poly [ADP-ribose] polymerase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38119 True 1433 lncRNA 0.40 10 55418687 55423743

Neighbor

gene id symbol gene type direction distance location
LOC103024257 efr3b,LOC108424480,LOC107678842,LOC107697142,LOC107549699 coding downstream 51365 55314960 ~ 55367322 (-)
LOC103025507 NA coding downstream 160169 55244116 ~ 55258518 (-)
trnal-cag_7 NA coding downstream 574543 54844062 ~ 54844144 (-)
rfx6 rfx6,LOC107678847,LOC104962418 coding downstream 592162 54815778 ~ 54826525 (-)
vgll2 vgll2 coding downstream 637307 54772275 ~ 54781380 (-)
LOC103021751 NA coding upstream 24383 55448126 ~ 55460855 (-)
ttc32 ttc32 coding upstream 38291 55462034 ~ 55465720 (-)
laptm4a laptm4a coding upstream 62869 55486612 ~ 55494508 (-)
LOC103035409 NA coding upstream 89016 55512759 ~ 55528667 (-)
churc1 churc1,LOC107659227,LOC107721357,LOC107555763 coding upstream 137827 55561570 ~ 55564747 (-)
G28390 LOC108424481,LOC108257757 non-coding downstream 13683 55401736 ~ 55405004 (-)
G28386 NA non-coding downstream 28357 55389865 ~ 55390330 (-)
G28315 NA non-coding downstream 171084 55246766 ~ 55247603 (-)
G28306 NA non-coding downstream 247078 55171134 ~ 55171609 (-)
G28299 LOC103032688 non-coding downstream 259550 55157318 ~ 55159137 (-)
G28395 NA non-coding upstream 553 55424296 ~ 55425649 (-)
G28505 NA non-coding upstream 211782 55635525 ~ 55636660 (-)
G28568 NA non-coding upstream 462580 55886323 ~ 55890103 (-)
G28567 NA non-coding upstream 470766 55894509 ~ 55894839 (-)
G28604 NA non-coding upstream 702414 56126157 ~ 56126524 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other downstream 104508 55266091 ~ 55314179 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other downstream 794847 54556888 ~ 54623840 (-)
LOC103040805 NA other downstream 1362990 54049795 ~ 54055697 (-)
akap7 NA other downstream 1511275 53742880 ~ 53907412 (-)
trnal-cag NA other downstream 1796329 53622071 ~ 53622358 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other upstream 8338 55432081 ~ 55444669 (-)
LOC111189318 NA other upstream 76157 55499900 ~ 55501760 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other upstream 179127 55602870 ~ 55606886 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 210789 55634532 ~ 55641375 (-)
G28536 NA other upstream 392129 55815872 ~ 55816598 (-)

Expression


Co-expression Network