G63320


Basic Information

Item Value
gene id G63320
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 11817096 ~ 11823077 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU85441
ttgtcaagagttaattacttgaatttcttcttcccttactttaagaaatgaagatcagaagATCAGTCTGTACAAAAAAttgtgcagtcgcaaagaccatcaaaaattatgtgatggaactggctctcatcaggaccgccccaggaaagaaagaccaagacgttcctctgttgcacaggataagttcatcagagttaccagcctcagaaaccacaagttaacaaaacCACAGATAAGAGCAACTAAATGCTTTAgtacagagtattttgggtttgtttaacactttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85441 True 288 lncRNA 0.38 2 11817096 11823077

Neighbor

gene id symbol gene type direction distance location
LOC111192951 LOC108427081 coding downstream 11519 11780555 ~ 11805577 (-)
LOC103026034 gramd4,gramd4a,LOC108427081,LOC107721158 coding downstream 37247 11724467 ~ 11779849 (-)
zbed4 zbed4,LOC107735570 coding downstream 1383642 10424589 ~ 10433454 (-)
creld2 creld2 coding downstream 1411224 10394930 ~ 10405872 (-)
LOC103042295 LOC108425305,LOC105896948,LOC105020256,LOC108279434,LOC105913407 coding downstream 1784425 9986304 ~ 10032671 (-)
LOC103026753 LOC108427079 coding upstream 1769 11824846 ~ 11965807 (-)
trmu trmu,LOC102792203 coding upstream 147720 11970797 ~ 11978759 (-)
tprkb tprkb coding upstream 163837 11986914 ~ 11990505 (-)
LOC103023221 cpne8,LOC108427072,LOC108279828,LOC104935575 coding upstream 206237 12029314 ~ 12246559 (-)
LOC103029962 LOC108427070,LOC108279892 coding upstream 432228 12255305 ~ 12320325 (-)
G63265 NA non-coding downstream 181581 11630642 ~ 11635515 (-)
G63259 NA non-coding downstream 1158672 10658204 ~ 10658424 (-)
G63255 NA non-coding downstream 1186636 10630129 ~ 10630460 (-)
G63248 NA non-coding downstream 1226486 10590346 ~ 10590610 (-)
G63247 NA non-coding downstream 1251470 10564675 ~ 10565626 (-)
G63384 NA non-coding upstream 160219 11983296 ~ 11983560 (-)
G63519 NA non-coding upstream 512542 12335619 ~ 12336210 (-)
G63538 LOC108427067 non-coding upstream 704812 12527889 ~ 12529641 (-)
G63540 NA non-coding upstream 711888 12534965 ~ 12538377 (-)
G63552 NA non-coding upstream 759700 12582777 ~ 12587477 (-)
G63217 NA other downstream 1405865 10314799 ~ 10411231 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other downstream 2194308 9618661 ~ 9622788 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other downstream 3643280 8166485 ~ 8173816 (-)
LOC103046475 lyrm5a,etfrf1,lyrm5,LOC103046475 other downstream 4197664 7617535 ~ 7619432 (-)
LOC111192940 NA other downstream 4957426 6787342 ~ 6859670 (-)
G63516 NA other upstream 497478 12320555 ~ 12380556 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other upstream 542391 12365468 ~ 12500663 (-)
LOC103025415 iqsec3,LOC107689235 other upstream 982894 12805971 ~ 13027498 (-)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 other upstream 2018116 13841193 ~ 13887868 (-)
G64034 NA other upstream 2962244 14785321 ~ 14786149 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G838442 NA non-coding NC_048573.1 CM023227.2 72505041 ~ 72505349 (+)