G63552


Basic Information

Item Value
gene id G63552
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 12582777 ~ 12587477 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU85755
ggagctactttgagcctgggtAATGGTGGAATctattggggcaaaatatgccccgatattgccgttgtacagagtgctggtttcggattttggctcttgctcatgaatattcatacatgcaaacatatcacctctgattggctaacagcactaccACAGCAGGAAGCAGAcgacagttagaaacgttttaaaataaagccatttttacactaataacagtctttgcgaTGTCATATGTTACCTTACAACATGTGTTataccctgctaagtgcagttcagccactgacccagTCTTAGAGCCTCTGTAAACTgcaaaatccactggagatcctatctAAATTCAAAAGTTAGTCACAAAGGTGGGTAgttcaggtccagaaagtaaaaatccaccctgatgttttgttggctgagctgcagcagggtcaatttttacttttaactagtgtaaacagaactgaacCTCAGTATCTCAATTGTAGACATAGACAAATTTAAAcaatttgttccttagctcttaCCTACTGGGAAAAGCATATAACACTAATGTGTTATTTGGACAAATAACTcaggaacgaactgccatgctgttcctagcactgttagctcATAACCTGGCTcaacttgtttttctgaatatttactttttcttagctgctgcagacaatgatgtttgaggaacagtttcatatacagcatgcatatacaactcagagggacctagtatttcacaaagaacaagaaaaagtggattttagacCTTTAAAAAACTTGCTGTGACCAAAATGCTATCCCCAATTTAGCTGAGCTAATTAACCCAACAACTTACTATATaaaggactccccctatcaagTGTTAGAGGTCAAGCAGAACACCAATGATTCACCAATGCTTCTTTCAGCCGCCAAACTAAAGGTGTGGGAAAACAAACATACGTAAACCCTTACGTAAACACTTACGTATATCTAATCTCATCTACTGCCTTTACTTTACAACCTCACCTTTAATCCTCAGGTAAACCTGTAAAACTGTGTTCACGTGTTTCTGTGGGTCTGAACCTGCACTACTGTTCCAGCTCTGAACAGACAGCAGGAGAAAAGTAAACACCCACCTATCAGGAAGATGGCCTTCGATGCGGACTGGCCATAGGTCTGCTCCATGTACTTCGGCTTGAACGTGATCATCCCGATGAAGCCGTTAACTTGAACCAGGGCAGACATGGTGACGGGCTCTTGTTTGTCGGGTGCTGGGCTGCTGGTGCTGTCCGTGGTGATGAACGTATCCTGCTCGCCCTCTTGATCATCAcagctcttcttctcttcttctccttgTTTGGGCAGTGATCTGGGCAGGAACCAAAATGGGATCCCAGCCACCAGCATCACAGTTCCGGTCACCAAGAAGCCGAGCCACCAGGCCCCCACCCAGCGAGTGTCTTTATGATCAATGGCGATGGTGT

Function

NR:

description
PREDICTED: semaphorin-3B-like isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko05204 Chemical carcinogenesis - DNA adducts

RNA

RNA id representative length rna type GC content exon number start site end site
TU85755 True 1460 lncRNA 0.43 2 12582777 12587477

Neighbor

gene id symbol gene type direction distance location
LOC103029428 abcd2,LOC108427069,LOC107689723,LOC107566844,LOC107689245,LOC106575983 coding downstream 223036 12330033 ~ 12359741 (-)
LOC103029962 LOC108427070,LOC108279892 coding downstream 262452 12255305 ~ 12320325 (-)
LOC103023221 cpne8,LOC108427072,LOC108279828,LOC104935575 coding downstream 336218 12029314 ~ 12246559 (-)
tprkb tprkb coding downstream 592272 11986914 ~ 11990505 (-)
trmu trmu,LOC102792203 coding downstream 604018 11970797 ~ 11978759 (-)
LOC103033667 NA coding upstream 96749 12684226 ~ 12689035 (-)
LOC103024791 parp11,LOC108280019,LOC107726831,LOC107597042,LOC107689238,LOC105020367,LOC102790985,LOC107748476 coding upstream 104113 12691590 ~ 12699482 (-)
LOC103034510 tnni1d,LOC108280151,LOC108427054,LOC107597014,LOC103374597 coding upstream 662175 13249652 ~ 13260256 (-)
scyl2 scyl2,si:ch211-244b2.1,LOC107755162 coding upstream 809008 13396485 ~ 13422065 (-)
depdc4 LOC108427048 coding upstream 836161 13423638 ~ 13432932 (-)
G63540 NA non-coding downstream 44400 12534965 ~ 12538377 (-)
G63538 LOC108427067 non-coding downstream 53136 12527889 ~ 12529641 (-)
G63519 NA non-coding downstream 246567 12335619 ~ 12336210 (-)
G63384 NA non-coding downstream 599217 11983296 ~ 11983560 (-)
G63320 NA non-coding downstream 759700 11817096 ~ 11823077 (-)
G63607 NA non-coding upstream 212988 12800465 ~ 12803555 (-)
G63617 NA non-coding upstream 264797 12852274 ~ 12854361 (-)
G63662 NA non-coding upstream 570895 13158372 ~ 13162362 (-)
G63664 NA non-coding upstream 572042 13159519 ~ 13166674 (-)
G63669 NA non-coding upstream 585890 13173367 ~ 13198835 (-)
slc2a13 LOC108427068,LOC108280145,LOC107689243 other downstream 82114 12365468 ~ 12500663 (-)
G63516 NA other downstream 202221 12320555 ~ 12380556 (-)
G63217 NA other downstream 2171546 10314799 ~ 10411231 (-)
G63104 LOC108425317,LOC107562148,LOC107741714,LOC107687569 other downstream 2959989 9618661 ~ 9622788 (-)
LOC111192870 zgc:194209,LOC107584030,LOC107658744 other downstream 4408961 8166485 ~ 8173816 (-)
LOC103025415 iqsec3,LOC107689235 other upstream 218494 12805971 ~ 13027498 (-)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 other upstream 1253716 13841193 ~ 13887868 (-)
G64034 NA other upstream 2197844 14785321 ~ 14786149 (-)
LOC111192906 NA other upstream 2402752 14990229 ~ 14992730 (-)
G64060 NA other upstream 2406687 14994164 ~ 14994832 (-)

Expression


Co-expression Network