G108276


Basic Information

Item Value
gene id G108276
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 2755052 ~ 2756387 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU146283
aatcaccagtcttggatgagcactccttcagacatttcattctgtaaaacaaactctgatcaaaaacatgatacaataataaggtcattccaaagtgcaacttgttggctttcaggaacactcaaagaaatgaagaaaaaacattgtggaagtcagtgaatgttacttttattgaccaaccacagggaaaaaaatatggaatcactcaattctgaggaaaaaagtatggaatcatgaaaaacagataaacaaaagatgattcaaaatacatcactagtatttagttgcaccacctttggcttttataacggctttcagtctctgaggcatggacttgatgagtgacaaacagtattctgcatcaattttggtgccaactctctttgatagcagttgccagatcagctttgcaggtcggagccttcttgtggaccatttttttcaatttccaccacaggttttcaattgggttgagatctggactatttgcaggccatgacatcgactgaatgtgtctttctccaaggaatgccttcactgtttttgccctatggcacgatgcattgtcatcttggaaaattatttcattatctccaaacatctgttcaattgaagggatgagaaaactgtccaaaatgtcaatgtaaacttgtgcattgatagaagaattaaccacagtcatctccccagtgcctttgcctgacatgcagccccatatcatcaaggactgtggaaatttggttgttttcttcaggcaggcctcttcataaatctcactggaacggcaccaaacaaaagttccagcatcctGGTCCTTGTCCTTGgtccttgtccaatgcagattcttgactcatcactgaagataactttcatccagtcatccacagtccatgattgcctctctttagcccactgcagtcttgttcttttatgtttaggtgtcaatgatggttttcttttagctttcctgtattgaaatcccatttcctttaggcgatttcttacggttcggtcacatacattggctccagcttcttcccatttatgcttcatctgtttagttgtactttttcggttttcaagacaaatggccttaagttgcttgtcttgacgccttgatgtctttctcggtctaccagtacgcttggctttaacaaccattccatgctgtttgtatttggtccatatcttggatacagctgactgtgaacagcccacatctttagcaaccatgcgtgaagagttaccttcttcaagaagtttcacaatcctctcttttgtttcaagagacatttctcttgttggagccatggttcttgccactctaattcgtcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146283 True 1336 lncRNA 0.40 1 2755052 2756387

Neighbor

gene id symbol gene type direction distance location
utp6 utp6,LOC107710019 coding upstream 75331 2667611 ~ 2679721 (+)
tefm tefm coding upstream 121047 2626747 ~ 2634005 (+)
LOC111193706 NA coding upstream 168160 2573719 ~ 2586892 (+)
LOC103034191 NA coding upstream 285076 2466737 ~ 2469976 (+)
LOC103040472 LOC108424829 coding upstream 339218 2405685 ~ 2415834 (+)
trim25 LOC108272901 coding downstream 82885 2839272 ~ 2854178 (+)
nptx1 nptx1,LOC107750979,LOC107701212,LOC107553322 coding downstream 672797 3429184 ~ 3439321 (+)
LOC103027401 NA coding downstream 909287 3665674 ~ 3675499 (+)
LOC103027108 NA coding downstream 920832 3677219 ~ 3691402 (+)
LOC111193710 NA coding downstream 937460 3693847 ~ 3711534 (+)
G108247 NA non-coding upstream 67679 2686718 ~ 2687373 (+)
G108236 suz12,LOC107710018,LOC107553303,LOC107669539,LOC107591916 non-coding upstream 94268 2660291 ~ 2660784 (+)
G108186 NA non-coding upstream 271702 2483026 ~ 2483350 (+)
G108145 NA non-coding upstream 372258 2373796 ~ 2382794 (+)
G108093 NA non-coding upstream 1011513 1742583 ~ 1743539 (+)
G108277 NA non-coding downstream 1241 2757628 ~ 2762121 (+)
G108279 rab11fip4,LOC108424695,LOC108272798 non-coding downstream 11011 2767398 ~ 2772442 (+)
G108283 NA non-coding downstream 34719 2791106 ~ 2794907 (+)
G108293 NA non-coding downstream 103107 2859494 ~ 2861867 (+)
G108296 dgke,LOC107553311,LOC107710026,LOC107669537,LOC107591925,LOC107701198 non-coding downstream 120355 2876742 ~ 2878197 (+)
LOC103039651 znf207a,znf207,LOC105903839,LOC107698690,LOC107724436,LOC108444040 other upstream 187101 2561314 ~ 2567951 (+)
rhbdl3 rhbdl3,LOC107701837,LOC107754871,LOC107718708 other upstream 196791 2509108 ~ 2558261 (+)
G108181 NA other upstream 280972 2473656 ~ 2474080 (+)
LOC111193655 NA other upstream 301371 2437709 ~ 2453681 (+)
ttc22 ttc22 other upstream 1740651 999915 ~ 1014401 (+)
c13h17orf67 cunh17orf67,LOC103372327,LOC106524488 other downstream 124647 2881034 ~ 2884211 (+)
anapc11 anapc11,LOC107553313 other downstream 297519 3053906 ~ 3057561 (+)
G108354 p4hb,LOC107701207,LOC107553316 other downstream 315138 3071525 ~ 3088727 (+)
LOC111193711 NA other downstream 1032415 3788802 ~ 3827165 (+)
LOC111193715 NA other downstream 1551705 4308092 ~ 4357767 (+)

Expression


Co-expression Network