G108296 (dgke,LOC107553311,LOC107710026,LOC107669537,LOC107591925,LOC107701198)


Basic Information

Item Value
gene id G108296
gene name dgke,LOC107553311,LOC107710026,LOC107669537,LOC107591925,LOC107701198
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 2876742 ~ 2878197 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU146330
CTGTAATCACACAGTTTCGGCTGGGTCCCACACTGCTGCTTGCAAACTGTGCAATAACTGGCCAAGGGAACGTTCCCCCGAACCCACCGGTGGAGGAAGCTGCCGTCTGCCTGTGCCGGGGCCATGATCTCCTTACAGGGCAGGGTGTGGTCAGCCTTTCTGACACAGACCTCGTCTGAGCAGATTCCACAGCACTCACAGAACGCCCCCTGCAAGATAGGCTGGGTGCACACACAGCAGTATGTAGGCTTGTTGAACAGGTCAGTGTAGTGCCAGCCATGCTTGCTCCTGCGGAAGAGGTCCTTCAGCTGGACTTTGCGCTTGGGACGCTGGAAACTGCACCACAAGGTGATGAGGACTGGGAGCAGAATGGCCAAGCTGGTCCAGAGAAGCAGGGTCAAGTCATCATGCGAATCCTCCATAGTTAGTAATGATCAGCGGTTTACAAATGCAGTGTCTGATTTATCTGGCTTGTATGCTTGTATGTAGACTGTGAGACCATTAGTATTAAAGCATTGAATTGATATATTTTGGGATGTGCCAGACTGGTAGCTTATCTGTCATAATGCAACAAAAAGGGTTCCTACATCCAAAATAAGCCTGCATCATCACCACCAAGCATTTGTGAAGATCACATCAAAATATTCAGGTGCATCAGTGTCATATAATTTGTCCAAATTGCTACTGGTCTGTCAAAAAAGTCCCAATGATTGTCACATCAGCACCAAGTAATCTAGGGGACTTCTTTTATCTGTGCAGATCACACCATAATCATTCCAGATCTTCCACACTGCTACTTATCAAAACACTAGATTACACACTATGTCTGTGCATATAACTTTACAGATTAAATTTAAGGGCTACACATTGCAATCCAACGATGAACATTAAAAAGCACCAAAACGCAACACTTAAACAAACAAGTTCTACCTCCTATTGGCACCAAACATCCCGGATGAAATCAGAATCCTCAGTGAATCCAGTTCCCTCCAGTTCATACTCCTCCTTTAACCAGTTTAACCCGCCATGTTTATCTAATCACAGGCTCTCAGCCTCGCTCTGCTGCAcagctggagctgctgctgaagcCGGTCAGAGCGCCGGTCAGAGCAGAAAACGCTGAATAACGGCAGACCCGCTGCTGTCTGGACCTCTGTTTCACCATACGCTTACACATCCGGGAAGAAA

Function

symbol description
dgke Predicted to enable diacylglycerol kinase activity. Predicted to be involved in diacylglycerol metabolic process; intracellular signal transduction; and lipid phosphorylation. Predicted to act upstream of or within phosphorylation and protein kinase C-activating G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in nephrotic syndrome type 7. Orthologous to human DGKE (diacylglycerol kinase epsilon).

NR:

description
PREDICTED: diacylglycerol kinase epsilon

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146330 True 1188 lncRNA 0.47 2 2876742 2878197

Neighbor

gene id symbol gene type direction distance location
trim25 LOC108272901 coding upstream 22564 2839272 ~ 2854178 (+)
utp6 utp6,LOC107710019 coding upstream 197021 2667611 ~ 2679721 (+)
tefm tefm coding upstream 242737 2626747 ~ 2634005 (+)
LOC111193706 NA coding upstream 289850 2573719 ~ 2586892 (+)
LOC103034191 NA coding upstream 406766 2466737 ~ 2469976 (+)
nptx1 nptx1,LOC107750979,LOC107701212,LOC107553322 coding downstream 550987 3429184 ~ 3439321 (+)
LOC103027401 NA coding downstream 787477 3665674 ~ 3675499 (+)
LOC103027108 NA coding downstream 799022 3677219 ~ 3691402 (+)
LOC111193710 NA coding downstream 815650 3693847 ~ 3711534 (+)
LOC103032370 NA coding downstream 833455 3711652 ~ 3722108 (+)
G108293 NA non-coding upstream 14875 2859494 ~ 2861867 (+)
G108283 NA non-coding upstream 81835 2791106 ~ 2794907 (+)
G108279 rab11fip4,LOC108424695,LOC108272798 non-coding upstream 104300 2767398 ~ 2772442 (+)
G108277 NA non-coding upstream 114621 2757628 ~ 2762121 (+)
G108276 NA non-coding upstream 120355 2755052 ~ 2756387 (+)
G108317 NA non-coding downstream 28693 2906890 ~ 2907446 (+)
G108328 NA non-coding downstream 104056 2982253 ~ 2982942 (+)
G108340 NA non-coding downstream 149138 3027335 ~ 3027701 (+)
G108356 NA non-coding downstream 179902 3058099 ~ 3059896 (+)
LOC103023742 NA non-coding downstream 226766 3104963 ~ 3106436 (+)
LOC103039651 znf207a,znf207,LOC105903839,LOC107698690,LOC107724436,LOC108444040 other upstream 308791 2561314 ~ 2567951 (+)
rhbdl3 rhbdl3,LOC107701837,LOC107754871,LOC107718708 other upstream 318481 2509108 ~ 2558261 (+)
G108181 NA other upstream 402662 2473656 ~ 2474080 (+)
LOC111193655 NA other upstream 423061 2437709 ~ 2453681 (+)
ttc22 ttc22 other upstream 1862341 999915 ~ 1014401 (+)
c13h17orf67 cunh17orf67,LOC103372327,LOC106524488 other downstream 2837 2881034 ~ 2884211 (+)
anapc11 anapc11,LOC107553313 other downstream 175709 3053906 ~ 3057561 (+)
G108354 p4hb,LOC107701207,LOC107553316 other downstream 193328 3071525 ~ 3088727 (+)
LOC111193711 NA other downstream 910605 3788802 ~ 3827165 (+)
LOC111193715 NA other downstream 1429895 4308092 ~ 4357767 (+)

Expression


Co-expression Network