G108356


Basic Information

Item Value
gene id G108356
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 3058099 ~ 3059896 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU146413
ctgAACTTAATAGTTCGGTGGAAACAAAATGCTGCCTGTACAAAGATTATGGcacattttatgttaaattgCTCATAGTTGTGAagaatatttatctatttttttttaccataacaCAACCCTAGTTTATGTTGatactttagtactttattGACctgattcctttttttttacatagttacATTTCCAGTCTATTAAAaccagtaaataaacagaaattgtgtttaaaatgtgcagaaaatgcCTGGAACTATATTCTTAGGGGGAAAAACAAATCTGGTATACTAACAGGGACACTAATGCTATCATTATGTATGGGCCCAGTAACATCCAATACAATAATTGTTGTGCCTGTTCTAGGGGTTACATGAGCTTAAAGCTCCACTCTGCATTTAGAAGTTAAATATCAGCATTTTATTAACATATggtaaacaaaattaaaacatatatagttGGTCATGGTCATACGATAacattgtatctccaaaatggcaacattacaggaaaaggaaacaaaagtaaaacagattttaaacagaataaatttCAGGGCATTTTTCTTGTTCCAGTGTCTTCAAGGCCAggtcttgagatggcagcagtaggacaaaggtagggccactggttttaagacctatttatttattttttattaacgtAACTTTGGACTGTAAAGGTGTCCATAAATGATGACCGTATAAAATTCCACCGTAAAATCTGCAGtaatatttaagatttaagtGGAGAGTGAATTATCGTTGGaaaccattaggaacctctacaactccatgctgagaggTCTGGCATTTGTATAaattattgttcctggtaacctttatgtAAATGACAAGTGTATATACTGGCCAGGAATCGTGCCTTCAGAATCAGCATTGGGCTGGTAACAAAAACAATGGCTTTATCCATTTACAGACTGTTTATCTGTGTCAGGAGAGCAATGCCATATGTTTCAAGCAGGCATGCTGACAGGTTATTTGAGGTTTTGAATGTAGATAAATGTCCTGCACAGATGCTATAATCTACAACTCTAAGACTACAACAGCCTTTTTATAAATGTGGCCACAAATTCTCGCTGCTATGCAAACCATTTGCAGATACAGATTATTTACTGGTGTTTGGTTAGAGATATAGCTCTGTAAATCTGTTCGTGGATAAGTAATGAGAACttaatcagtaatcagtttctgaccacagaacctcaATCAGAACCCTACcagttataaatataataggATAAGATGCAATATGTAACTGTATATGTATACAATGGACTTAAATAACAGGCGTTTCTGATACAATGGCCAGTAAATGCAGGCACAAAATGCATGTACAACTAATAAAGTGCAACTCTTTGTATTTAGCATCCTAGTGAATTTAACTACATAGAAAGATATAAACTGTAATCATAAAGCATCTAAGAACAGAACAGCTGATGAAAAAAATAGCTTTCATGGCTGAAGCCTCTATGAaatgggcaaaaaaaatcaggaaagtAGAAACCTTGTACAAAGTcgattcaaaaataaaaatgcgcTTGCTGGAGACATGCGTAAGCAGAACTGGACCTTCACCGCTTTAACTAAGACTTTTTGGAATCCTGTGTGTTCCGCCGCCTGACGTCATTTAGGTCCACTGGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146413 True 1656 lncRNA 0.35 2 3058099 3059896

Neighbor

gene id symbol gene type direction distance location
trim25 LOC108272901 coding upstream 203921 2839272 ~ 2854178 (+)
utp6 utp6,LOC107710019 coding upstream 378378 2667611 ~ 2679721 (+)
tefm tefm coding upstream 424094 2626747 ~ 2634005 (+)
LOC111193706 NA coding upstream 471207 2573719 ~ 2586892 (+)
LOC103034191 NA coding upstream 588123 2466737 ~ 2469976 (+)
nptx1 nptx1,LOC107750979,LOC107701212,LOC107553322 coding downstream 369288 3429184 ~ 3439321 (+)
LOC103027401 NA coding downstream 605778 3665674 ~ 3675499 (+)
LOC103027108 NA coding downstream 617323 3677219 ~ 3691402 (+)
LOC111193710 NA coding downstream 633951 3693847 ~ 3711534 (+)
LOC103032370 NA coding downstream 651756 3711652 ~ 3722108 (+)
G108340 NA non-coding upstream 30398 3027335 ~ 3027701 (+)
G108328 NA non-coding upstream 75157 2982253 ~ 2982942 (+)
G108317 NA non-coding upstream 150653 2906890 ~ 2907446 (+)
G108296 dgke,LOC107553311,LOC107710026,LOC107669537,LOC107591925,LOC107701198 non-coding upstream 179902 2876742 ~ 2878197 (+)
G108293 NA non-coding upstream 196232 2859494 ~ 2861867 (+)
LOC103023742 NA non-coding downstream 45067 3104963 ~ 3106436 (+)
G108383 NA non-coding downstream 80010 3139906 ~ 3142465 (+)
G108384 NA non-coding downstream 82740 3142636 ~ 3144776 (+)
G108375 NA non-coding downstream 106132 3166028 ~ 3172270 (+)
G108376 NA non-coding downstream 109359 3169255 ~ 3170575 (+)
anapc11 anapc11,LOC107553313 other upstream 538 3053906 ~ 3057561 (+)
c13h17orf67 cunh17orf67,LOC103372327,LOC106524488 other upstream 173888 2881034 ~ 2884211 (+)
LOC103039651 znf207a,znf207,LOC105903839,LOC107698690,LOC107724436,LOC108444040 other upstream 490148 2561314 ~ 2567951 (+)
rhbdl3 rhbdl3,LOC107701837,LOC107754871,LOC107718708 other upstream 499838 2509108 ~ 2558261 (+)
G108181 NA other upstream 584019 2473656 ~ 2474080 (+)
G108354 p4hb,LOC107701207,LOC107553316 other downstream 11629 3071525 ~ 3088727 (+)
LOC111193711 NA other downstream 728906 3788802 ~ 3827165 (+)
LOC111193715 NA other downstream 1248196 4308092 ~ 4357767 (+)
G108773 march7 other downstream 1526431 4586327 ~ 4591793 (+)
wdsub1 wdsub1,LOC108411000,LOC105893302 other downstream 1745333 4805229 ~ 4827718 (+)

Expression


Co-expression Network