LOC111193711


Basic Information

Item Value
gene id LOC111193711
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 3788802 ~ 3827165 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU146693
ACAGAATCTTTAAAGCAATATATAATCAGTATGACAATATGGAACCGTTCTTTAAACTATAGAATCTTTTAGACAATACATAATCATTCTGGAAGTATGGAATCAGGTCTTCATGAGCCACTATGTCATGTTTGCTATGTCATGTTTCTATTGGTTGACACTGAGTCTCTTTTTTACTCATACTAGTTTTATAAGTGCTGATGTTTTCTATAGTATTTTGTATTGTGGGTATTGACTTTTTGTAAACTTAGGCCCCTTAACATTTGGCACTTTTGATTAAAACAGACAAGATTTAGCACTTTATCAAGTGGCAGCAGTGTAAATTAGCGTAAAAGTGAGTGTGAAATGaatgagagaaataaaaaatttataGAAAAATTCTgaggtatttttaaaaaagattttttgcaTAATTCATTTAAAGATACAGAATATATGTTTGTTTTGGTCCTGGGACCACCATTGTCCCCTGTCCCCTGAATGCTGTGTTTCTTTTTCCAGTGTCAGACTGTTACTTTTTTGCTGGTAATACTGGTGTAGTTTATATACATTCTGTAACCTGTGAACTCCTTtgttacatatataataaaaacaacatatgCTTGAATATATAAAGTACATTTCTACCTaaaggaaaaaaaaaaaaaaaaaaaaaaaaaaacaaagaaaaaaaatacctgCATTATTTCTTATTTGTACACACAAGTTAAGCCAGGTGAGGTAGACTAAGGTAACTTCGGCACAACCATGAAACGGTCTTATCCCAGCGGTacccaaaaaagaaagaaaattaagaaa
>TU146696
ACAGAATCTTTAAAGCAATATATAATCAGTATGACAATATGGAACCGTTCTTTAAACTATAGAATCTTTTAGACAATACATAATCATTCTGGAAGTATGGAATCAGGTCTTCATGAGCCACTATGTCATGTTTGCTATGTCATGTTTCTATTGGTTGACACTGAGTCTCTTTTTTACTCATACTAGTTTTATAAGTGCTGATGTTTTCTATAGTATTTTGTATTGTGGGTATTGACTTTTTGTAAACTTAGGCCCCTTAACATTTGGCACTTTTGATTAAAACAGACAAGATTTAGCACTTTATCAAGTGGCAGCAGTGTAAATTAGCGTAAAAGTGAGTGTGAAATGaatgagagaaataaaaaatttataGAAAAATTCTgaggtatttttaaaaaagattttttgcaTAATTCATTTAAAGATACAGAATATATGTTTGTTTTGGTCCTGGGACCACCATTGTCCCCTGTCCCCTGAATGCTGTGTTTCTTTTTCCAGTGTCAGACTGTTACTTTTTTGCTGGTAATACTGGTGTAGTTTATATACATTCTGTAACCTGTGGACTCATTTgttacatatataataataacaacatataCTTGAATATATAAAGTACATTTCTACCTAAATACTGCTTTGTTGAATCATTTCTGAT
>XM_022675245.1
tgtctgtctgtctgtagtaCTGACAGAAACCAGCCTGCTGTAAGGATGTCTGGTCCAGCTGTACCTCTCACCAACGTGGGAAATGGCTACACCATTGTGACCCATGTGTTCTCCCCACAAACAGGCACGAGTGAAACACAGCAAAATGTCTCCAGCGGTGGATCAGTTCAAAAATTTCTGAAAGGAGAACCAAAAGCACTAGGAacCGTCCAAATAATGATTGGCCTGTTGATGTTCCTGTttggtattgtgatattgacCGATTCCCCTCCTATCATTACCGTCTACAGTCGCATCTCCTTCTGGGGGTCATTGCTGTTTATCGTCACCGGCTCGCTCGCTGTTTCAGCAAGCAACAAGCTCCATCGCTGTGTGgtgAATGGTGCTTTGACAATGAATGTGTTTAGCGCAGTAACTGCAGCAATAGCCATCTACTTGCTTTCCATGGATTTGGCGTTTTCAGAACGGTGCTATGACGATTATGAATACGGAAGCCGATACAAATGTTCCTCCAGGaaacagTCCAGGGGCATTGCCGGAGTGCTGCTGGTTTTCTGTGTGCTTCAGTTCATCATCTCCATCTTCATCGCAGCCCATTCCTGTCGCGCTTCCTGCAACACTGAACCTGCAGTGAACATCACTGTGGTTCCAAACCAAGAAGGATTCTGTTCAGTGGTCAATCCCTTCCCCACTCAGAACAACCCACAGTGGATGTATGGAGCCGGTGGTGCCACTGCGAGTGCCAGTGCTCCTGTGGAAAGTCCTCCAGAGTACTCCGAGACCAAATGCCCCCCAGACAACTGAGGATAAACAACCTTAAGATGATTAAAACCTGAACTGcacttacacacaaatacaaatataatgtaCATCTCGCAATGCAAAGAATTTTGctgatatattttctttatgcaGATTCTATTTTATGTACTCtttagtatatacagtattttgcttCTGCACTTCACCTAGGGTTGCTACTCATCCCCTAAAATATTTCTTACAATATGGTGTCTTTTTTTAGACAACACAGAATCATTCTAACAGTAAAGAATTGTTccttaaaatatgaaatagttCCTTAAAAAATAGAATCTTTTAGACAATACAGAATTGTTTAGACAATAATGGAATTATTCCTTAAAATACAGAATCTTTAAAGCAATATATAATCAGTATGACAATATGGAACCGTTCTTTAAACTATAGAATCTTTTAGACAATACATAATCATTCTGGAAGTATGGAATCAGGTCTTCATGAGCCACTATGTCATGTTTGCTATGTCATGTTTCTATTGGTTGACACTGAGTCTCTTTTTTACTCATACTAGTTTTATAAGTGCTGATGTTTTCTATAGTATTTTGTATTGTGGGTATTGACTTTTTGTAAACTTAGGCCCCTTAACATTTGGCACTTTTGAGTAAAACAGACAAGATTTCGCACTTTATCAAGTGGCAGCAGTGTAAATTAGTGTAAAAGTGAGTGTGAAATGAATGAGAGAAATGAAATTTTATAGAAAAATTCTGAggtaattttaaaaaaagaatttttgCATAATTCAGTTAAAGATACAGAACATATGTTTGTTTTGGTCCTGGGACCACCATTGCCCCTTGTCCCCTGAATGCTGTGTCTTTTTCCAGTGTCAGACTGTTACTTTTTTGCTGGTAATACTGGTGTAGTGTGTATACATTCTGTAACCTGTGGACTCATTTgttacatatataataataacaacatataCTTGAATATATAAAGTACATTTCTACCTAAA

Function

GO: NA

KEGG:

id description
ko04514 Cell adhesion molecules
ko05160 Hepatitis C

RNA

RNA id representative length rna type GC content exon number start site end site
TU146693 False 798 lncRNA 0.31 2 3788802 3821429
TU146696 False 658 lncRNA 0.31 2 3788802 3827165
XM_022675245.1 True 1777 mRNA 0.39 7 3811286 3827139

Neighbor

gene id symbol gene type direction distance location
LOC103026540 NA coding upstream 301 3774202 ~ 3788501 (+)
LOC103032048 NA coding upstream 33093 3744263 ~ 3755709 (+)
LOC103026824 LOC103026824 coding upstream 49564 3724537 ~ 3739238 (+)
LOC103032370 NA coding upstream 66694 3711652 ~ 3722108 (+)
LOC111193710 NA coding upstream 77268 3693847 ~ 3711534 (+)
atg9a atg9a,LOC107741391,LOC107677585 coding downstream 183555 4010720 ~ 4028284 (+)
LOC103030027 LOC103030027 coding downstream 293783 4120948 ~ 4131860 (+)
LOC103030560 LOC108430861 coding downstream 306378 4133543 ~ 4146826 (+)
LOC103029388 col5a2,LOC107555399 coding downstream 350988 4178153 ~ 4253833 (+)
LOC103032560 calcrl,LOC107555409,LOC107743566 coding downstream 635163 4462328 ~ 4516447 (+)
G108587 NA non-coding upstream 16011 3769417 ~ 3772791 (+)
G108584 NA non-coding upstream 23161 3765277 ~ 3765641 (+)
G108546 NA non-coding upstream 78915 3704889 ~ 3709887 (+)
G108535 NA non-coding upstream 124067 3664496 ~ 3664735 (+)
G108529 NA non-coding upstream 130898 3650511 ~ 3657904 (+)
G108599 NA non-coding downstream 22460 3849625 ~ 3856988 (+)
G108654 NA non-coding downstream 257489 4084654 ~ 4094411 (+)
G108743 NA non-coding downstream 670594 4497759 ~ 4503260 (+)
G108778 NA non-coding downstream 777529 4604694 ~ 4607409 (+)
G108784 NA non-coding downstream 789190 4616355 ~ 4616772 (+)
G108354 p4hb,LOC107701207,LOC107553316 other upstream 700075 3071525 ~ 3088727 (+)
anapc11 anapc11,LOC107553313 other upstream 731241 3053906 ~ 3057561 (+)
c13h17orf67 cunh17orf67,LOC103372327,LOC106524488 other upstream 904591 2881034 ~ 2884211 (+)
LOC103039651 znf207a,znf207,LOC105903839,LOC107698690,LOC107724436,LOC108444040 other upstream 1220851 2561314 ~ 2567951 (+)
rhbdl3 rhbdl3,LOC107701837,LOC107754871,LOC107718708 other upstream 1230541 2509108 ~ 2558261 (+)
LOC111193715 NA other downstream 480927 4308092 ~ 4357767 (+)
G108773 march7 other downstream 759162 4586327 ~ 4591793 (+)
wdsub1 wdsub1,LOC108411000,LOC105893302 other downstream 978064 4805229 ~ 4827718 (+)
LOC103029387 LOC103029387 other downstream 1229373 5056538 ~ 5062119 (+)
G108999 LOC108411783,LOC107584812,LOC107555440,LOC107709735,LOC107705592 other downstream 1478885 5306050 ~ 5309757 (+)

Expression


Co-expression Network