LOC111193713


Basic Information

Item Value
gene id LOC111193713
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 3823519 ~ 3877683 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU146704
TCCCAGCGTGTGTGTGCTGCACGGAGCTGGAGATAAATGTCCATTTTGTGTGAGGAAATATTGAGTAAAGACGCTGTTTAAACTGTACTACAGTGATACACAAGTACCCTCGTTGGAGATTTTTTAGTTATCAACCGAGTTGGATAAACTTTTGCGCTGTTTGATTGAGGGAGACTCCGGTTGTTTTAATAGACGGGAGAAACGAGTGAACTTGTCAAATCCAAGATGGCGAGCCAACCCTGAAACTACGATCCCCAGAATCCTATGCGAGCGTTTTCCCGCCACCCGAGCCCCAACGGCGCCTCGAGGAGGGAAACAGATAAGAGGAGcagagtcacacacacacactctctaaaaAACGTAGTCTACCCGGGTAGTGAAGAGACCCACTTTTTTCTGACAATAGCA
>TU146705
ttgcactatttcaaattattctaattcgttgaccagcacctgTACTTAACAAAGTCCTGTATTATATAGGTTGTTTTAATAGACGGGAGAAACGAGTGAACTTGTCAAATCCAAGATGGCGAGCCAACCCTGAAACTACGATCCCCAGAATCCTATGCGAGCGTTTTCCCGCCACCCGAGCCCCAACGGCGCCTCGAGGAGGGAAACAGATAAGAGGAGcagagtcacacacacacactctctaaaaAACGTAGTCTACCCGGGTAGTGAAGAGACCCACTTTTTTCTGACAATAGCA
>XR_002650651.1
CCTGGTAAAATAAGCACTCTTTGGGTAAAGCCATTCTGAGGAGCCTGTGTGTAGACCCCTCCCACTTTTCCCTCTCTCCCACTTTCCCCTctctccacccccccccccccccctctttctctctctaccttgctCTCTCCCAGCGTGTGTGTGCTGCACGGAGCTGGAGATAAATGTCCATTTTGTGTGAGGAAATATTGAGTAAAGACGCTGTTTAAACTGTACTACAGTGATACACAAGTACCCTCGTTGGAGATTTTTTAGTTATCAACCGAGTTGGATAAACTTTTGCGCTGTTTGATTGAGGGAGACTCCGGTTGTTTTAATAGACGGGAGAAACGAGTGAACTTGTCAAATCCAAGATGGCGAGCCAACCCTGAAACTACGATCCCCAGAATCCTATGCGAGCGTTTTCCCGCCACCCGAGCCCCAACGGCGCCTCGAGGAGGGAAACAGATAAGAGGAGcagagtcacacacacacactctctaaaaAACGTAGTCTACCCGGGTAGTGAAGAGACCCACTTTTTTCTGACAATAGCAAActcaaatcataaaaaaaaagaagagacacggactgaaacaaacataaaaaagggactgttgggtttttttgaacatttaaatgctgtttCACAAAGAAGATTGTGATTAGTAAATGAGTTCTGTTGTTGAGCAGATTGTGTTCTGATTTACTTGATACTGCATAGATGcactgtatttctttattttgaggttttggattttgttttgtttattaactCATTCAGTGAATTTACAGTATTAAGCCCCATTGAATTAAGCCACATcccctttttattattttttcctttccccATTTAATTTCATCCACACCCATATTCTCTTCATAGTCACTAAaggtacattttatttatttttgttcttttaataaataacctgCATCTTGAACTCTGTATAAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146704 False 408 lncRNA 0.47 2 3876561 3877283
TU146705 False 298 lncRNA 0.46 2 3823519 3877283
XR_002650651.1 True 945 lncRNA 0.41 2 3876424 3877683

Neighbor

gene id symbol gene type direction distance location
LOC103026540 NA coding upstream 35018 3774202 ~ 3788501 (+)
LOC103032048 NA coding upstream 67810 3744263 ~ 3755709 (+)
LOC103026824 LOC103026824 coding upstream 84281 3724537 ~ 3739238 (+)
LOC103032370 NA coding upstream 101411 3711652 ~ 3722108 (+)
LOC111193710 NA coding upstream 111985 3693847 ~ 3711534 (+)
atg9a atg9a,LOC107741391,LOC107677585 coding downstream 133037 4010720 ~ 4028284 (+)
LOC103030027 LOC103030027 coding downstream 243265 4120948 ~ 4131860 (+)
LOC103030560 LOC108430861 coding downstream 255860 4133543 ~ 4146826 (+)
LOC103029388 col5a2,LOC107555399 coding downstream 300470 4178153 ~ 4253833 (+)
LOC103032560 calcrl,LOC107555409,LOC107743566 coding downstream 584645 4462328 ~ 4516447 (+)
G108585 NA non-coding upstream 22994 3765928 ~ 3800525 (+)
G108587 NA non-coding upstream 50728 3769417 ~ 3772791 (+)
G108584 NA non-coding upstream 57878 3765277 ~ 3765641 (+)
G108546 NA non-coding upstream 113632 3704889 ~ 3709887 (+)
G108535 NA non-coding upstream 158784 3664496 ~ 3664735 (+)
G108654 NA non-coding downstream 206971 4084654 ~ 4094411 (+)
G108743 NA non-coding downstream 620076 4497759 ~ 4503260 (+)
G108778 NA non-coding downstream 727011 4604694 ~ 4607409 (+)
G108784 NA non-coding downstream 738672 4616355 ~ 4616772 (+)
G108786 NA non-coding downstream 752408 4630091 ~ 4713305 (+)
G108354 p4hb,LOC107701207,LOC107553316 other upstream 734792 3071525 ~ 3088727 (+)
anapc11 anapc11,LOC107553313 other upstream 765958 3053906 ~ 3057561 (+)
c13h17orf67 cunh17orf67,LOC103372327,LOC106524488 other upstream 939308 2881034 ~ 2884211 (+)
LOC103039651 znf207a,znf207,LOC105903839,LOC107698690,LOC107724436,LOC108444040 other upstream 1255568 2561314 ~ 2567951 (+)
rhbdl3 rhbdl3,LOC107701837,LOC107754871,LOC107718708 other upstream 1265258 2509108 ~ 2558261 (+)
LOC111193715 NA other downstream 430409 4308092 ~ 4357767 (+)
G108773 march7 other downstream 708644 4586327 ~ 4591793 (+)
wdsub1 wdsub1,LOC108411000,LOC105893302 other downstream 927546 4805229 ~ 4827718 (+)
LOC103029387 LOC103029387 other downstream 1178855 5056538 ~ 5062119 (+)
G108999 LOC108411783,LOC107584812,LOC107555440,LOC107709735,LOC107705592 other downstream 1428367 5306050 ~ 5309757 (+)

Expression


Co-expression Network