G108599


Basic Information

Item Value
gene id G108599
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 3849625 ~ 3856988 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU146713
agagagagcgagagtcaGAGTTTTTATCTTACTTGAGCAGAGCCCCCAGCGAGCATCGTTCAGTGGGCAGAGAGACTGGGGGGGCAGGATAGATCGGACGGGGTATGTGATACATGACTGCGTCTTTATACACCACAAACACGAAGTGTTTTGCAAACAATCCTCACAgtttgtgctgtttttgttcTCACATGTTTGTCCAGGTGCGGCAGTTTGCGCCGAGCTCGCGCTCACCCCGAACAGCAGGAGAATCACAGGAACCCAGACCCTCATCCTCAGATCCTCAAATCCTCAGTCCACGCTCAGTATTCACCCCCAGATCAGCCTGTATTCACCAGGAGTCTGAGCTCAGCTCTGTTAACAGTGTTTCAATACTAAACCCTGGTTAAAACTTGACTCTACCCacacctcc
>TU146714
GAGCCACAGTGGCAGTGCGCGTTCCTGCTCTCAGGCGACCTGTCAATCAACTTGCCCTCAGCTGTCAATCACCACATTGCCACACCTCTTTAAACATCACAGAATAACTCTTATAAAACGTattaactgtaaagaaaaacacagggGGGTTATTAACACAGGAGGGGGGCTTGCAGAATGTACAGAACCCAACTTCCAAAAAAAATCCTggatgtgtaattttagattaaagatTCTGCTACTCTCATTCAGCTGAATGAAAATAGGCGGGGTTAAAAGTTGTACTGAAGCCATCCAACAGAGCGCGTAAGAGATgtagtggcttcacttttcAACCCCTGTCATGCTgtccatacttatatacagtctatggtataAACAAGGGGTGGAATGGGCCAGGGATAATGCACTGACCGTATGAATCAACCCTTACAATTCAGGGGGCAATCTTAGCAAGTAACATATCtgcatttaaagcagcattcaCACCATTGGCTTTACCGTGTGGATGGCCCAAATACACTACAAGCTACAGACAAGTAATTTGTGAGCTGACAATTAGGTAAGTGTATAAAAAAGTGTATGATGAACTGCAAGCAGaatccacttaaaaatgagtggGTCAGATTACTAGCTAATTGTCAAGCTAGTTTATGTAGTACTTTAATTACTTAAGGGTTTAGGAAACACTCTTTGATTAACTATGAGTTATGCACCCCAGATTAGTTGctaaataacataataaatgcAGGCATGGATGGAAAGGCTTGGTGTAGAGATTATTGATGAACAGTGGGAATGGTCTCTTAAGAATATCAACAGTTCAATGTTCAATAAATAGAAGACATACggtggtgtaaaaaagtgtttacccccttcatgatttcttttttcactcttaaatgttttcagatcattttttaattaagagGTTTATTAttaggggagaaaaaaaatcaaaccctGTATGAAAAGacgtttgccccctaaacctattAGATGGTTGGGCCAACCCTTAGCAGCATCAACTGCAATCAATCGTTTGCAGTCACTTGCAATAAGTCTTCCAAAAAATTTaaacttttgtctcgtcagtccacagagtattttcccAAATGTCTTGTGGATCATCAAGATGCTTTCTGGCAAAAatgttctttggatgttgttgtggggtcttttgagACCTCTTAGATGAGTCGTCGctgtgctcttggggtaattttggttggccggccactcctgggaagattCACCACTATTCCACATTTTTGCCctttgtggataatggctctcactgtagTTCGCTgtagtcccaaaactttaggaatggttttataaccttttccagaatGATAGAtcatgtttttgaatttctttggatactggcatgatgtctagcttttgagtatTATTTGGTCTATTTTGCTTTATCAGTCAGGTCCTATTTAAGAGATTGAGAACAGGTGCGGCAGTATTCAGACCTGGGTGTGTCtagagaaattgaactcaggtgtgataaaccacagttagGTTTAACTGGGgatgcaaacactttttcacacagggtccTTATAGGTTGGCAtttccttcatttaaaaactgcattttgtttttacgtgtgttgtctttgactaatacttatatttgtttgatgatctgaaaggATCACTAATGCATTTAGGAGATATTTCAGTATGTAGAGGGTAAGGGCACAAGCCTAAACTAAACACCTGTGATCTTTGATGGCTCAGACAGAACTGCCTCAAGATACGTCATTCAGCAATAGCTAATAGAACCACATGTGTAAAAGATTACTTTGGCAAACCTTCGTCAATCACTACACTGCAGAGTTACTACATTCACAAATACCACTTAAACCTTTACTGTGCACACCCCTGGTCAACAAATCTCCTACTGTAATTAGCTCAACAAGTAAAATATGACCTAATTTCCAAAAGCCTTAGgttaatttttttgtcttgttaaatttttaagttaaataacTAGTATTTCTTTGTTGTTGCAGCTTCTAAGCTACCAAATTAGGTTTAATATTAatcctaaatatttaaataatcctTCCAAACTTGAGAACGTCACTCTGCATCAGTTTTACACTTGATAATGAAACAAGAATTACAGCACTGAGGCCAGTGAAATTTATGGGCAGCAGATGGATAAAATCTAGGACACACAGTATCAAACTGCAGGAAAAGGACAGCGAGGGAGAGGAAACACACTGCAAACCTGTTCCACGGGTACAGCTGGAGGCACAGTGAATAACTGAtacacacagacgcacacacacacaccccaaacaCCTGTAAACAGCAACACATTCCTAAACCGCTTCTCTTTTTCCTCATTTCACTTCTCTAAATCATTTGCTGCGCACTGACCTATCACATCCTCTCTCTACATTTCAAATGAATGCACAAGGAGAAAGAAGGTGATAGgtcagtgtacagtgtgtgagtTATACCTGTAAATATCACCAGAGACAAATCACAAGAAAGGTCTGAATCATCACTGGACTCTAATAATGTACGCAGTTAAATCACACAGTGTATTTGTACTAAAACAGACATCATTCATCTTAATGTGGCCATCTTCCGACATCTCTTTTAGAATTAAACAGGCTGCTTTGGTTCATGTGTCATTAACAGCATTGTAAGACTGTGACATGCCTGCACATGAAGGGAGTaggatttcagcacaacactccttccttttcttcttctgtttgtgTAATGGGCAATGATAGcctgcctcaacttcctgtaattggtctaaaaGTTCAAACCATGCAACTCTagaacacaacacaatacacaacaataacttacagagagactagaTACCCTGgttatatcttaataaatttaaaactaaCAAAGCTAACTTAAAATGAGCTTAATTCAAGGAATTTAAAGATTTGCGGTCAGTGTTGGCCAATTGTTTTAGTGTGGAAACATGCCAATTCTATAAAAGCAATTATCAGCCCATACCGATCTAATTACAATATCATTTCACACtaggggtgagcgatatggccctaaaataataccaTGATATTTTACGATAcacttggcgatatgacaaaacatcaaaataaaaacaaaaagaaaactcaGGAATACACTACGAcaacaaaatacaattttatttctattattttatacaatattatatgtcatacccctaactgagatatataaaaaaaaatacaagaattttatcagatttctaacagaagtcaatggtcCAGaatgtctctagtagatataccataggaaatgagaacagtgtgaattccactttcttaaaaaaatgtagtaccctgatgtgataattaggggtggatgatatttcggtatataatattattcacgatattattgcgtacaataaATAAGGCACAGCCTTATTTCACACTGTCAACTTCCTGTAACTGGTCAGAAAGTCTAAACCTCTTTAGGTCGGACCAAATTTTGTTCATTTGGTCCAGTGCTTTAACAAAATGCATCAAACTATTTTATTGTCTTTACTTACCGAAGTGTTTTGCAAACAATCCTCACAgtttgtgctgtttttgttcTCACATGTTTGTCCAGGTGCGGCAGTTTGCGCCGAGCTCGCGCTCACCCCGAACAGCAGGAGAATCACAGGAACCCAGACCCTCATCCTCAGATCCTCAAATCCTCAGTCCACGCTCAGTATTCACCCCCAGATCAGCCTGTATTCACCAGGAGTCTGAGCTCAGCTCTGTTAACAGTGTTTCAATACTAAACCCTGGTTAAAACTTGACTCTACCCacacctcc

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146713 False 412 lncRNA 0.51 3 3849625 3856988
TU146714 True 3826 lncRNA 0.38 2 3850344 3856988

Neighbor

gene id symbol gene type direction distance location
LOC103026540 NA coding upstream 61124 3774202 ~ 3788501 (+)
LOC103032048 NA coding upstream 93916 3744263 ~ 3755709 (+)
LOC103026824 LOC103026824 coding upstream 110387 3724537 ~ 3739238 (+)
LOC103032370 NA coding upstream 127517 3711652 ~ 3722108 (+)
LOC111193710 NA coding upstream 138091 3693847 ~ 3711534 (+)
atg9a atg9a,LOC107741391,LOC107677585 coding downstream 153732 4010720 ~ 4028284 (+)
LOC103030027 LOC103030027 coding downstream 263960 4120948 ~ 4131860 (+)
LOC103030560 LOC108430861 coding downstream 276555 4133543 ~ 4146826 (+)
LOC103029388 col5a2,LOC107555399 coding downstream 321165 4178153 ~ 4253833 (+)
LOC103032560 calcrl,LOC107555409,LOC107743566 coding downstream 605340 4462328 ~ 4516447 (+)
G108585 NA non-coding upstream 49100 3765928 ~ 3800525 (+)
G108587 NA non-coding upstream 76834 3769417 ~ 3772791 (+)
G108584 NA non-coding upstream 83984 3765277 ~ 3765641 (+)
G108546 NA non-coding upstream 139738 3704889 ~ 3709887 (+)
G108535 NA non-coding upstream 184890 3664496 ~ 3664735 (+)
G108654 NA non-coding downstream 227666 4084654 ~ 4094411 (+)
G108743 NA non-coding downstream 640771 4497759 ~ 4503260 (+)
G108778 NA non-coding downstream 747706 4604694 ~ 4607409 (+)
G108784 NA non-coding downstream 759367 4616355 ~ 4616772 (+)
G108786 NA non-coding downstream 773103 4630091 ~ 4713305 (+)
LOC111193711 NA other upstream 22460 3788802 ~ 3827165 (+)
G108354 p4hb,LOC107701207,LOC107553316 other upstream 760898 3071525 ~ 3088727 (+)
anapc11 anapc11,LOC107553313 other upstream 792064 3053906 ~ 3057561 (+)
c13h17orf67 cunh17orf67,LOC103372327,LOC106524488 other upstream 965414 2881034 ~ 2884211 (+)
LOC103039651 znf207a,znf207,LOC105903839,LOC107698690,LOC107724436,LOC108444040 other upstream 1281674 2561314 ~ 2567951 (+)
LOC111193715 NA other downstream 451104 4308092 ~ 4357767 (+)
G108773 march7 other downstream 729339 4586327 ~ 4591793 (+)
wdsub1 wdsub1,LOC108411000,LOC105893302 other downstream 948241 4805229 ~ 4827718 (+)
LOC103029387 LOC103029387 other downstream 1199550 5056538 ~ 5062119 (+)
G108999 LOC108411783,LOC107584812,LOC107555440,LOC107709735,LOC107705592 other downstream 1449062 5306050 ~ 5309757 (+)

Expression


Co-expression Network