G108786


Basic Information

Item Value
gene id G108786
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 4630091 ~ 4713305 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU146965
ATAAGAATGAAAAagagagagagagagagagagagagggaaggagtgCGAGTAAGCCTGCAGGCTTTATTTAGCTACAACAACTGAACATGAGCTCATTACACACAGAATCTGAGGCTTGGGCAAACTGAAATACCTCCAGTGCAGCAATACACGTTTAATGTGATCTCTCTATCCAAGCACACACATCTCCTTTCTAATAGATCTCTCTGTCCAAGCACACATCTAGTCTGTTCAGGCCGGGATTTGCTGGGATTTGCCCCCCGGGGACAGCCCAATGAAATGATGTGTGGTGGTATTCCGGGAAATTGTCTGGAATTTTAAATGTCATGCTGTACTGTACATTTCCTGAATATACTATAGCACGAGATTCTCATTTCAGACACTGGAGGGCTGGGGTCCACTCCCTCTTTACATATAGAACCTGCCAGAGGGAATCTCTCAAGCCTGAAACAGTAGATACACTTGTAGTTGGTCgagaaaaaaggcaaaaagttGCTCATCCAAGTTTGATAAAGGGAGCTGCTTGCTGTCcttaaaaaatagcaaaatgtaGCTGTTACTATTTTGGCACTAGGggtgcaacgattagtcgatataatcgccaatgtttattataaaaatttgtcgactccaaatgttcattgtcgactaatcgttaatttttgcactcacacagtttacactcaacttggcaacagattacacatttcctcactaaatatcagtatatCCATATTTAAAGGGCAATGTTCTGGACATTTGAAGGGCATTTAAATCctttgttcagctgtttctatcattgtAAAGcgaagacagagaaagaagctAGAAACAGCAGCCATACCAACAGCAAACAGAAATGaagggcatggcagaaataatggttgactaatcgactaattagGAAAATAATCgctagattagtcgacta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146965 True 933 lncRNA 0.41 2 4630091 4713305

Neighbor

gene id symbol gene type direction distance location
LOC103032560 calcrl,LOC107555409,LOC107743566 coding upstream 113644 4462328 ~ 4516447 (+)
LOC103029388 col5a2,LOC107555399 coding upstream 376258 4178153 ~ 4253833 (+)
LOC103030560 LOC108430861 coding upstream 483265 4133543 ~ 4146826 (+)
LOC103030027 LOC103030027 coding upstream 498231 4120948 ~ 4131860 (+)
atg9a atg9a,LOC107741391,LOC107677585 coding upstream 601807 4010720 ~ 4028284 (+)
LOC111193672 NA coding downstream 353970 5067275 ~ 5070703 (+)
LOC103029080 LOC108411784 coding downstream 491801 5205106 ~ 5211379 (+)
LOC103028447 stk24,stk24b,LOC108411787,LOC108273064,LOC107709742,LOC107705591 coding downstream 535201 5248506 ~ 5271660 (+)
LOC103040245 fam117ba,LOC108411669,LOC108272899,LOC107748582,LOC107555413,LOC107705530,LOC107660077,LOC107584760,LOC107688895 coding downstream 848677 5561982 ~ 5576303 (+)
LOC103038682 cxcr4,LOC108411668 coding downstream 958207 5671512 ~ 5675221 (+)
G108784 NA non-coding upstream 13319 4616355 ~ 4616772 (+)
G108778 NA non-coding upstream 22682 4604694 ~ 4607409 (+)
G108743 NA non-coding upstream 126831 4497759 ~ 4503260 (+)
G108654 NA non-coding upstream 535680 4084654 ~ 4094411 (+)
LOC111193713 NA non-coding upstream 752408 3823519 ~ 3877683 (+)
G108931 NA non-coding downstream 407182 5120487 ~ 5124677 (+)
G108970 NA non-coding downstream 560266 5273571 ~ 5273890 (+)
LOC111193718 NA non-coding downstream 571196 5284501 ~ 5288137 (+)
G109001 NA non-coding downstream 598755 5312060 ~ 5312375 (+)
G109029 NA non-coding downstream 810242 5523547 ~ 5580796 (+)
G108773 march7 other upstream 38298 4586327 ~ 4591793 (+)
LOC111193715 NA other upstream 272324 4308092 ~ 4357767 (+)
LOC111193711 NA other upstream 802926 3788802 ~ 3827165 (+)
G108354 p4hb,LOC107701207,LOC107553316 other upstream 1541364 3071525 ~ 3088727 (+)
anapc11 anapc11,LOC107553313 other upstream 1572530 3053906 ~ 3057561 (+)
wdsub1 wdsub1,LOC108411000,LOC105893302 other downstream 91924 4805229 ~ 4827718 (+)
LOC103029387 LOC103029387 other downstream 343233 5056538 ~ 5062119 (+)
G108999 LOC108411783,LOC107584812,LOC107555440,LOC107709735,LOC107705592 other downstream 592745 5306050 ~ 5309757 (+)
G109242 NA other downstream 1451294 6164599 ~ 6166662 (+)
G109248 LOC108433704 other downstream 1539905 6253210 ~ 6255057 (+)

Expression


Co-expression Network