LOC103029387 (LOC103029387)


Basic Information

Item Value
gene id LOC103029387
gene name LOC103029387
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 5056538 ~ 5062119 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU147130
AGTCCACCAGAGAAGAATGAGCTCCTCTATCACCTACATTAAAAAGCTGATCCGGAAAGGGAGCCGAACAAGTTCTTTTTCCCGACCAAAACCGGCCCACAAGAAGAACTATGTGATCCCAGAGGAGCACACACACAAGgaAGCACCGACTAACACACAACATATGAGCCATGATTCCAAAagGGAAAGTGTGCTCATGTCAAAGCAGGACAGTGAAGCATTCGGATTTGAAATCAGGACATATAATGAGCAGATGAAGGTAAACAGCAGTGAGGAGGACGTGTtaacgtgtgtgtgttcagtgagaGAGAACAGTCTGGCAGAGAGTGCTGGGTTAAGGACAGGGGACGTCATTAtcagtgtgaacagtgtgtgtgttgaaggtTTCGAGCATCAGCAGATTGTTGACCTGATTCAGAGCTCCTGCTTACTAAAGATGGAGATTTTGAGGGGAACTACAGTGAAACAAAAAGAACTTCAAAAGAAATTAAATCACATACAGTGGCAGCTGAACCAAAAGTGGGAGGAGCTGCAGATGCTTATCGCGCAAGAAGAACGTCTGCTAAGAGaccAGGACTGTCCCCCTATCCCCAGGAATGGGACTTTCTCCAGGGGAACTTCTCAACTGACCAAAGAACTCCCAAGGCTGGATTACCCCTGCAGCACTATGACTACCCGTatcacttcagttttttttaacacccaTAACTCAAGCTACTGGATTGTTTGTCAAACAAGAAGCACCATAGGaaggttaaaaaataaagaacttgaatGTATTGTAGgttatgttta
>XM_007248795.3
AagaagctgagagagagagacttgtcCTCACTCGCAGATCAGTCCACCAGAGAAGAATGAGCTCCTCTATCACCTACATTAAAAAGCTGATCCGGAAAGGGAGCCGAACAAGTTCTTTTTCCCGACCAAAACCGGCCCACAAGAAGAACTATGTGATCCCAGAGGAGCACACACACAAGgaAGCACCGACTAACACACAACATATGAGCCATGATTCCAAAagGGAAAGTGTGCTCATGTCAAAGCAGGACAGTGAAGCATTCGGATTTGAAATCAGGACATATAATGAGCAGATGAAGGTAAACAGCAGTGAGGAGGACGTGTtaacgtgtgtgtgttcagtgagaGAGAACAGTCTGGCAGAGAGTGCTGGGTTAAGGACAGGGGACGTCATTAtcagtgtgaacagtgtgtgtgttgaaggtTTCGAGCATCAGCAGATTGTTGACCTGATTCAGAGCTCCTGCTTACTAAAGATGGAGATTTTGAGGGGAACTACAGTGAAACAAAAAGAACTTCAAAAGAAATTAAATCACATACAGTGGCAGCTGAACCAAAAGTGGGAGGAGCTGCAGATGCTTATCGCGCAAGAAGAACGTCTGCTAAGAGGTGACCAAACCAGCACACATTCAGAGCCCTGCCCTGCTTCTGAGCATCCCAGCCTTCCTATCACAGTGCCTTAGACCCAATCAGGGCACTTTAAAGGACACTTTACTTCAGCTGTGATGTCaggattttttcttttcagaccAGGACTGTCCCCCTATCCCCAGGAATGGGACTTTCTCCAGGGGAACTTCTCAACTGACCAAAGAACTCCCAAGGCTGGATTACCCCTGCAGCACTATGACTACCCGTatcacttcagttttttttaacacccaTAACTCAAGCTACTGGATTGTTTGTCAAACAAGAAGCACCATAGGaaggttaaaaaataaagaacttgaatGTATTGTAGgttatgtttaaattattatgtgTAAATTATAGAAACATGTTAATGCTTTGTGGCACTTGAGCATGTGGATTTGTACAAGTCCCATTAAGCATTGCTTTATTCTCATTTCATGTCTTAAATGTGGTATTGTCTTATTTAAGTTTTGTAtcgatatgtatatataaatgatcttatatgttttgtatatagttctctatttttttatttatacagttattTATATCTGGAGTATTTATGGATTTGACACATGCGAACTAATTAAAATGCTCATCACAGCA

Function

NR:

description
cytohesin-interacting protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147130 False 795 TUCP 0.45 8 5056578 5061851
XM_007248795.3 True 1242 mRNA 0.41 8 5056538 5062119

Neighbor

gene id symbol gene type direction distance location
LOC103034257 LOC108411001 coding upstream 252497 4648463 ~ 4804041 (+)
LOC103032560 calcrl,LOC107555409,LOC107743566 coding upstream 540091 4462328 ~ 4516447 (+)
LOC103029388 col5a2,LOC107555399 coding upstream 802705 4178153 ~ 4253833 (+)
LOC103030560 LOC108430861 coding upstream 909712 4133543 ~ 4146826 (+)
LOC103030027 LOC103030027 coding upstream 924678 4120948 ~ 4131860 (+)
LOC111193672 NA coding downstream 5156 5067275 ~ 5070703 (+)
LOC103029080 LOC108411784 coding downstream 142987 5205106 ~ 5211379 (+)
LOC103028447 stk24,stk24b,LOC108411787,LOC108273064,LOC107709742,LOC107705591 coding downstream 186387 5248506 ~ 5271660 (+)
LOC103040245 fam117ba,LOC108411669,LOC108272899,LOC107748582,LOC107555413,LOC107705530,LOC107660077,LOC107584760,LOC107688895 coding downstream 499863 5561982 ~ 5576303 (+)
LOC103038682 cxcr4,LOC108411668 coding downstream 609393 5671512 ~ 5675221 (+)
G108786 NA non-coding upstream 343233 4630091 ~ 4713305 (+)
G108795 NA non-coding upstream 353200 4703015 ~ 4703338 (+)
G108794 NA non-coding upstream 360129 4694723 ~ 4696409 (+)
G108788 NA non-coding upstream 368013 4641586 ~ 4688525 (+)
G108789 NA non-coding upstream 404693 4651578 ~ 4651845 (+)
G108931 NA non-coding downstream 58368 5120487 ~ 5124677 (+)
G108970 NA non-coding downstream 211452 5273571 ~ 5273890 (+)
LOC111193718 NA non-coding downstream 222382 5284501 ~ 5288137 (+)
G109001 NA non-coding downstream 249941 5312060 ~ 5312375 (+)
G109029 NA non-coding downstream 461428 5523547 ~ 5580796 (+)
wdsub1 wdsub1,LOC108411000,LOC105893302 other upstream 228820 4805229 ~ 4827718 (+)
G108773 march7 other upstream 464745 4586327 ~ 4591793 (+)
LOC111193715 NA other upstream 698771 4308092 ~ 4357767 (+)
LOC111193711 NA other upstream 1229373 3788802 ~ 3827165 (+)
G108354 p4hb,LOC107701207,LOC107553316 other upstream 1967811 3071525 ~ 3088727 (+)
G108999 LOC108411783,LOC107584812,LOC107555440,LOC107709735,LOC107705592 other downstream 243931 5306050 ~ 5309757 (+)
G109242 NA other downstream 1102480 6164599 ~ 6166662 (+)
G109248 LOC108433704 other downstream 1191091 6253210 ~ 6255057 (+)
rims4 rims4,LOC107666126,LOC107696477,LOC107708122 other downstream 1669025 6731144 ~ 6866913 (+)
blcap blcap,bc10 other downstream 1882646 6944765 ~ 6985492 (+)

Expression


Co-expression Network