G112236


Basic Information

Item Value
gene id G112236
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 19555120 ~ 19555323 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU151708
ggtttcatacggcccctcacgggttaacaaaataagcatacatctggcccgcaattcaatttaattatttatgctttattatgttcgttttcatattttatcttaacttgtattttggtgtgtgtgtgtttttttttttttttttgcttacgctgcgttgcctgctttaatagtcttcagtagccttcaacagtctaaccttgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151708 True 204 lncRNA 0.35 1 19555120 19555323

Neighbor

gene id symbol gene type direction distance location
LOC111193659 NA coding upstream 1662 19552598 ~ 19553458 (+)
LOC103026928 LOC108424733 coding upstream 15167 19530085 ~ 19539953 (+)
atf4 atf4 coding upstream 28837 19523007 ~ 19526283 (+)
LOC107196872 NA coding upstream 34539 19512839 ~ 19520581 (+)
LOC103032771 NA coding upstream 44400 19503453 ~ 19510720 (+)
LOC103024777 NA coding downstream 3850 19559173 ~ 19632441 (+)
LOC103023193 LOC108424702 coding downstream 126257 19681580 ~ 19684902 (+)
LOC103023513 LOC108424737 coding downstream 132847 19688170 ~ 19713899 (+)
LOC103021744 LOC108424739 coding downstream 174683 19730006 ~ 19739621 (+)
LOC103021430 NA coding downstream 185958 19741281 ~ 19757839 (+)
G112162 LOC103028781,LOC108424728 non-coding upstream 62834 19482828 ~ 19492286 (+)
G112151 NA non-coding upstream 114979 19411622 ~ 19440141 (+)
G112142 psmd12 non-coding upstream 188286 19359345 ~ 19366834 (+)
G112138 NA non-coding upstream 218021 19311542 ~ 19337099 (+)
G112118 NA non-coding upstream 345354 19206367 ~ 19209766 (+)
G112249 NA non-coding downstream 162179 19717502 ~ 19740514 (+)
G112302 NA non-coding downstream 241263 19796586 ~ 19798041 (+)
G112304 NA non-coding downstream 255693 19811016 ~ 19811221 (+)
G112316 fdx1l non-coding downstream 288143 19843466 ~ 19849332 (+)
G112338 NA non-coding downstream 465557 20020880 ~ 20023875 (+)
dph3 dph3,LOC108437844,LOC107559917,LOC107660145,LOC107748572,LOC107738311 other upstream 303309 19245245 ~ 19251811 (+)
LOC103038704 LOC108437839 other upstream 1608006 17932691 ~ 17947114 (+)
G111857 chpf other upstream 1644732 17906115 ~ 17910388 (+)
G111719 tbc1d23,LOC107590650,LOC107731832,LOC107752629 other upstream 2072310 17471879 ~ 17482810 (+)
LOC103032787 lpp,LOC108427685,LOC108271779,LOC107590653,LOC107684332,LOC107717931,LOC107752632,LOC107696776 other upstream 2399446 16776334 ~ 17155674 (+)
erp27 erp27 other downstream 97345 19652668 ~ 19665542 (+)
LOC111193742 NA other downstream 610117 20165440 ~ 20170248 (+)
tmprss6 tmprss6 other downstream 676647 20231970 ~ 20291684 (+)
ift27 ift27,rayl other downstream 982113 20537436 ~ 20552774 (+)
LOC103041062 cyh2,LOC108430008,LOC108273324,LOC100708025,LOC101487734,LOC102776527,LOC103356696 other downstream 1246326 20801649 ~ 20835935 (+)

Expression


Co-expression Network