erp27 (erp27)


Basic Information

Item Value
gene id erp27
gene name erp27
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 19652668 ~ 19665542 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU151715
GCAGATGCAGCTAATAAGCAACTTAACAAGGTCTTCCTGAGTCATTCGCCCAAAATGTGTCTCTTTCTGCTCTTTTCTTTGCTGGCCACCTGCTGTTTTGCCGAAGATAAAGTCTCTACAGACAGCGCCCTCCCCAGGCTGGCCGATGTAGCTGCAGCTGAGGCCTTTATTGACTCTGCTGAGGTGGTCATCATCGGGTTCTTCAAGGTCAGAGGctctgtgtgtaacagtgtgtgtgagtttgtgtgtgggaTGCAGGGTTAGCAACGAGTCTGAGAGTGATCGGTGCAGTCGCTCAGCGTTGAGCAGGAATGCAGACTGACGAAGAGAAAATAGCG
>TU151717
GGCTGATAAACATCAGGAGAACCTATTGctagaaaagataaaaaaacttGGACACTGACGGACTCGTCCGCTTCTTCACCATCAACAACATCCGTTACATCACAGAATACAACCAAGCGtcCGCAGTTGGCCTTTTCCAGTCAGAAGTGAAGGTGCATCTCCTGCTCTTTGCCAACAGGGGGAGTGCTGACTACAAACCTCTGCAGGAGAAGTTGGCAGCATTGGCACCTCACTATACCGGCAAGATGCTGTTTGTCCTCATTAATGGGAAGGTGAAGTCAAACGAACGAGCACTGGGCTACTTCAACCTGAAGCCAGGTGACCTGCCACGTGTGGGCATCTATGACGCAGACTCAGACAAGACCTTTCTCCTGCCTGAGGGTGAAATATCTACTGAGCGTGTCCAGAACTTCTGTGATTCCTTCATCAGTGGAGAGCTGCAGAAAGAAAAGGAGtctgaagaaaacaaaaagaagagtgAGCTCTAAATGTGAACACACCCACTTATAATAAAGCTTTTTACACTGTCTTACACAgacttttgactgatattttGTTTGATGATGAGTATTGcgtgtataaagtgtgtgtgtgtttgatacaGACAGAAGCAG
>XM_022675074.1
TATATTCTTTCTCCACTTTCTGCTTTGTCTTTTTTAGTCATTCGCCCAAAATGTGTCTCTTTCTGCTCTTTTCTTTGCTGGCCACCTGCTGTTTTGCCGAAGATAAAGTCTCTACAGACAGCGCCCTCCCCAGGCTGGCCGATGTAGCTGCAGCTGAGGCCTTTATTGACTCTGCTGAGGTGGTCATCATCGGGTTCTTCAAGGCTGATAAACATCAGGAGAACCTATTGctagaaaagataaaaaaattGGACACTGACGGACTCGTCCGCTTCTTCACCATCAACAACATCCGTTACATCACAGAATACAACCAAGCGtcCGCAGTTGGCCTTTTCCAGTCAGAAGTGAAGGTGCATCTCCTGCTCTTTGCCAACAGGGGGAGTGCTGACTACAAACCTCTGCAGGAGAAGTTGGCAGCATTGGCACCTCACTATACCGGCAAGATGCTGTTTGTCCTCATTAATGGGAAGGTGAAGTCAAACGAACGAGCACTGGGCTACTTCAACCTGAAGCCAGGTGACCTGCCACGTGTGGGCATCTATGACGCAGACTCAGACAAGACCTTTCTCCTGCCTGAGGGTGAAATATCTACTGAGCGTGTCCAGAACTTCTGTGATTCCTTCATCAGTGGAGAGCTGCAGAAAGAAAAGGAGtctgaagaaaacaaaaagaagagtgAGCTCTAAATGTGAACACACCCACTTATAATAAAGCTTTTTACACTGTCTTACACAga

Function

symbol description
erp27 Predicted to be involved in protein folding and response to endoplasmic reticulum stress. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151715 False 338 lncRNA 0.51 3 19652668 19657009
TU151717 False 614 TUCP 0.45 4 19661037 19665542
XM_022675074.1 True 739 mRNA 0.47 7 19654816 19665466

Neighbor

gene id symbol gene type direction distance location
LOC103024777 NA coding upstream 20227 19559173 ~ 19632441 (+)
LOC111193659 NA coding upstream 99210 19552598 ~ 19553458 (+)
LOC103026928 LOC108424733 coding upstream 112715 19530085 ~ 19539953 (+)
atf4 atf4 coding upstream 126385 19523007 ~ 19526283 (+)
LOC107196872 NA coding upstream 132087 19512839 ~ 19520581 (+)
LOC103023193 LOC108424702 coding downstream 16038 19681580 ~ 19684902 (+)
LOC103023513 LOC108424737 coding downstream 22628 19688170 ~ 19713899 (+)
LOC103021744 LOC108424739 coding downstream 64464 19730006 ~ 19739621 (+)
LOC103021430 NA coding downstream 75739 19741281 ~ 19757839 (+)
LOC103046175 LOC103046175,LOC108424744,LOC108273228 coding downstream 273428 19938970 ~ 19943368 (+)
G112236 NA non-coding upstream 97345 19555120 ~ 19555323 (+)
G112162 LOC103028781,LOC108424728 non-coding upstream 160382 19482828 ~ 19492286 (+)
G112151 NA non-coding upstream 212527 19411622 ~ 19440141 (+)
G112142 psmd12 non-coding upstream 285834 19359345 ~ 19366834 (+)
G112138 NA non-coding upstream 315569 19311542 ~ 19337099 (+)
G112249 NA non-coding downstream 51960 19717502 ~ 19740514 (+)
G112302 NA non-coding downstream 131044 19796586 ~ 19798041 (+)
G112304 NA non-coding downstream 145474 19811016 ~ 19811221 (+)
G112316 fdx1l non-coding downstream 177924 19843466 ~ 19849332 (+)
G112338 NA non-coding downstream 355338 20020880 ~ 20023875 (+)
dph3 dph3,LOC108437844,LOC107559917,LOC107660145,LOC107748572,LOC107738311 other upstream 400857 19245245 ~ 19251811 (+)
LOC103038704 LOC108437839 other upstream 1705554 17932691 ~ 17947114 (+)
G111857 chpf other upstream 1742280 17906115 ~ 17910388 (+)
G111719 tbc1d23,LOC107590650,LOC107731832,LOC107752629 other upstream 2169858 17471879 ~ 17482810 (+)
LOC103032787 lpp,LOC108427685,LOC108271779,LOC107590653,LOC107684332,LOC107717931,LOC107752632,LOC107696776 other upstream 2496994 16776334 ~ 17155674 (+)
LOC111193742 NA other downstream 499898 20165440 ~ 20170248 (+)
tmprss6 tmprss6 other downstream 566428 20231970 ~ 20291684 (+)
ift27 ift27,rayl other downstream 871894 20537436 ~ 20552774 (+)
LOC103041062 cyh2,LOC108430008,LOC108273324,LOC100708025,LOC101487734,LOC102776527,LOC103356696 other downstream 1136107 20801649 ~ 20835935 (+)
G112617 LOC107747660 other downstream 1331172 20996714 ~ 20997910 (+)

Expression


Co-expression Network