tnni1 (tnni1,tnni1b,LOC103040607,LOC106582713)


Basic Information

Item Value
gene id tnni1
gene name tnni1,tnni1b,LOC103040607,LOC106582713
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 24004549 ~ 24016801 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU153178
GCCCTCTGTGGGGAAGGTCTACAAGGGGAAGCTATTGTGAGCCAGCTATGCTGCTGCTGGGGCTCACTATACTTTCTGTACTGTTGTGAGACAGGATTCATTTTGATTAAAATCAGGCGGGGAACAATAAGGGGCCGGATTAAAAGGAGACATTGTTCCAGAGCATCATTCTGAGGGGCATCACTCCACCTACAGCAGCACTCAGAGGTTGAATCCACATTGTAAAGATGCCGGAG
>XM_007237592.3
GGGGAACAATAAGGGGCCGGATTAAAAGGAGACATTGTTCCAGAGCATCATTCTGAGGGGCATCACTCCACCTACAGCAGCACTCAGAGGTTGAATCCACATTGTAAAGATGCCGGAgCAAGAGAAAAAGTCCAAGATTTCCGCCTCACGCAAGCTGATGCTGAAGAGTATGATGGTGGCTAAAGCTAAAGAGGATTTGGAGCAGGAGCTGGAAgataaggaggaggagaagctgAGGTATCTGTCTGAGAAAGCTCCTCCCCTACAGACCAGCAGCATGTCTTTTGCAGAGCTCCAGGAACTGTGTCGAGAGCTTCATGCCAAGATAGATGAAGTGGATGAGGAGCGCTACGATATTGAAGCTAAAGTGCAACATAATACCAGAGAGATAAAAGACCTGAACATTAAAGTCCTGGACCTGAGAGGGAAGTTCAAGCGGCCCAACCTGAGGAGGGTGAGGGTCTCTGCAGACGCCATCCTGCGCTCTCTCCTGGGCTCCAAACACAAAGTTTCTCTGGACCTGAGAGCAAACCTCAAATCAGTCAAGAAAGAGGATACAGAGAAGGAAAAGTCAGTGGAGGTCAGTGACTGGAGGAAAAACGTGGAGGCCATGTCTGGGATGGAGGGTCGTAAGAAAATGTTTGATGCTGCCAAGGGGCCTAcacagtgaactaGTCATGGAGACGATGAAgtggagaaataaagaaataaagatgcTGATGTCTGTTTATCCACACCCAGCCTGCTGAAAACATCCAACATTgttaatatttgtgttttagtaCTGTGCAGAAGTTTTAGGcacatttttacagtatttaacatCATTAAGCTCTGATTTACAAAACCCGGTGTTAATTTAATGAAAGCTACAAATAACACTTCACTCCTTTAAGGAGaattttttcattaaataaattttagtttatttatttttcacaaatatataatttaaattataaagaaacaacaataaaaacaataattttaattGGAATTGGAATTAATTGCAAATGAGAGGCATGTAACCCTAGAGAACACACCAATGAAAACATAGGTTCAaaaccacattaaaaaaatgaaagacaaaACCAAATTAAATCATAACCAAAATGAGAAGGAAAGAGAATAGAGAACAAAaaagttattatacagtaaagttgaaaaagacaaatacatgaattaataacatgcaataattaaaaaaatcagaaaacagaTAAATctaagacaataaataaacagcataACTATATGGATGACTAATTATTACTGTTGatgttaataaaaacatttttcagataATCAGTGTATTGAATAtacagaatatcattgaaaagttactttatttcagtacttcagtaaaaaaatgtgaaactcatatattataaagatgtattaaacacagagtgatctattttaagcgtttatttattttattgttgttaattatggattacagccaattaataccccccaaaaaaatagtgtctcagaaaattgtgTGCCaaatactgctggaaaatgaaatccacatccgcatgaagtgctgtaagattgtcTTGTTTAAGGAAATGTTTTCATTATAATTATCTGAGGTGCCTAAAATTTTTCTTTGCGCAGTACTGTATGCTCTCTGTATGGTATATGTAGATGTATTGCCCGCATATATGAAAAATTAGACTTTTGTTTGAAATTAGTCTGAATGGTTTGTTGTTTTTCCAGACAGGCTTTTACTGTTAcacaccagtttttttttttttttttcagtttgtccTGATAGTATTTTCTAAAATGTATTACCGATAATGATTTACGTAAATGGCCAGTAATATGTTTCTGATTAAATGAATAGATTTGATAAGAAAATACAGCCACTGATTTTTTGTCAGtccaaatgtgttttattatgagCTCAATAAGGTATTTTCTATGAAGTA

Function

symbol description
tnni1b Acts upstream of or within heart development. Predicted to be part of troponin complex. Is expressed in cardiovascular system; lateral plate mesoderm; and musculature system. Orthologous to human TNNI1 (troponin I1, slow skeletal type).
tnni1 Predicted to enable actin binding activity and metal ion binding activity. Predicted to be involved in cardiac muscle contraction and skeletal muscle contraction. Predicted to act upstream of or within transition between fast and slow fiber and ventricular cardiac muscle tissue morphogenesis. Predicted to be located in cytosol. Predicted to be part of troponin complex.

NR:

description
troponin I, slow skeletal muscle

GO:

id name namespace
GO:0005861 troponin complex cellular_component

KEGG:

id description
K10371 TNNI1; troponin I, slow skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
TU153178 False 236 lncRNA 0.49 3 24013049 24016801
XM_007237592.3 True 1940 mRNA 0.35 9 24004549 24015859

Neighbor

gene id symbol gene type direction distance location
tnnt2 tnnt2,LOC108441587 coding downstream 13716 23953395 ~ 23990833 (-)
LOC103047745 NA coding downstream 406803 23589988 ~ 23597746 (-)
sys1 sys1,LOC107587582,LOC107744372,LOC106565403 coding downstream 460255 23540708 ~ 23544294 (-)
snrpc snrpc coding downstream 469265 23529197 ~ 23535284 (-)
c13h6orf106 c11h6orf106,cunh6orf106,zgc:101577,LOC107595408,LOC107724532,LOC107666165 coding downstream 526058 23460518 ~ 23478491 (-)
csrp1 csrp1,LOC108441585,LOC104918388,LOC100698513,LOC102788777,LOC101487148 coding upstream 10384 24027185 ~ 24038827 (-)
LOC103034389 NA coding upstream 405356 24422157 ~ 24459170 (-)
nol11 NA coding upstream 866092 24882893 ~ 24894218 (-)
c13h17orf58 cunh17orf58,LOC102781445,LOC105900187 coding upstream 968910 24985711 ~ 24999893 (-)
trnar-ccg_1 NA coding upstream 984883 25001684 ~ 25001756 (-)
G113318 NA non-coding downstream 57828 23946107 ~ 23946721 (-)
G113295 NA non-coding downstream 100845 23850328 ~ 23903704 (-)
G113260 NA non-coding downstream 242409 23664646 ~ 23762140 (-)
G113284 NA non-coding downstream 243417 23759936 ~ 23761132 (-)
G113281 NA non-coding downstream 251665 23752547 ~ 23752884 (-)
G113367 NA non-coding upstream 30375 24047176 ~ 24047420 (-)
G113393 NA non-coding upstream 237218 24254019 ~ 24254268 (-)
G113399 NA non-coding upstream 268152 24284953 ~ 24288949 (-)
G113471 manbal,LOC107666036,LOC107744407 non-coding upstream 395396 24412197 ~ 24419623 (-)
G113525 NA non-coding upstream 841463 24858264 ~ 24858555 (-)
G113304 NA other downstream 103051 23901123 ~ 23901498 (-)
G113276 NA other downstream 211088 23735954 ~ 23793461 (-)
LOC103040267 LOC108433657 other downstream 440742 23559101 ~ 23563807 (-)
G113190 NA other downstream 451485 23552349 ~ 23553064 (-)
LOC103039435 tusc2,LOC108433681,LOC103039435,LOC107696420,LOC107595412,LOC107724521 other downstream 692536 23299228 ~ 23312013 (-)
ctsa NA other upstream 1618503 25635304 ~ 25686577 (-)
G113826 NA other upstream 2016094 26032895 ~ 26062284 (-)
G113888 NA other upstream 2329339 26346140 ~ 26393197 (-)
G114134 kcnq2,LOC107758168,LOC107665991,LOC107558155 other upstream 4108435 28125236 ~ 28129856 (-)
G114270 NA other upstream 4331464 28348265 ~ 28361481 (-)

Expression


Co-expression Network