LOC103040245 (fam117ba,LOC108411669,LOC108272899,LOC107748582,LOC107555413,LOC107705530,LOC107660077,LOC107584760,LOC107688895)


Basic Information

Item Value
gene id LOC103040245
gene name fam117ba,LOC108411669,LOC108272899,LOC107748582,LOC107555413,LOC107705530,LOC107660077,LOC107584760,LOC107688895
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 5561982 ~ 5576303 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230872.2
cccaccctcctcctctctctgctcgtgtttttttcctgagcagctgctgcagctctACCGCCCGCCCTCCGCCGCCAATCCCTGCATTTTAATCGGCTTCGTCCGCCTCCATCTGCCGCCCTGCTCCCTCCGCCGGACCCCTGCGCGGGCTGCGCTGTGTTTTCGCTGATTTTTTGTTGTAATATGAATTTTGTGGCTGAAGCTGCAGAAGATACACCCCACTACAGCCCTGTATCCAGCTGAAAAACTGAGGCCCCACACTCCCCTGGACTCACTCACCCTATCAGGGAACTGGCATCAGCACGTAAGCTCCGCCCACCCCACCCTCTCAATGAGGGACAAAGCCACCCAGACCCCCAGGGCCTGGGTAGATGAGCGGAGGAGAGGCTCTCATAAACGCTCAGCCTCCTGCGGCAGCACAGACCAGCTGAAAGAGATTGCAAAACTGCGGCAGCAGCTCCAGCGCAGCAAGCGCAGCAGTCGCCACCGACGGGACAAAGAGCGCAAATCACCTTTCAATGGCAACCATGCTATTATCCAATCACAGTCTCAGATGCCTAAAACCATCTTGATCCCCATTCCCATCTCCAAGTCCACACCCCCCCGCTTCCGAAACAGCATCGAGGGCCTTAACCAGGAGATCGAGCGCATCATCATACGAGACACTCCAGAGCGAGATGAGGTCATCATTcCACAGGACGTTCCCGATGGGCACCGCGCCCCCCCACCTCTGCCCCggcgcagcagcagcacccGCAGCATCGACACCCAGACGCCCTCAGGGGGTGGCCTGGGCAATCgtagcaacagcagcagccgGGCAGATTCAGTGTCGCCCTCGTACCTCAGCATCCTGAACGACATGGGAAACAGCCCCCTGCCCAACGACGACACGCTCAGCGAGAGCAGGGAGAAAgACCTTGGCCCCTACTCCCCTCTGCCCAAATACGCCTCCTCCCCAAAACCCAACAACAGCTACATGTTCAAGCGCGAGCCCCCAGAGGGCTGTGAGAAGGTCAAAGTGTTCGAGGAGAATCAGCCGAGGCCTCTGCAGGAGATCCCCCCATACCTGTGTCCCGACAGAAACAAGGTGAACTTCATCCCCAAGAGTGGCTCCGCCTTCTGCCTGGTGAGTATCCTGAAGCCCCTGCTGCCCACCCAGGAGCTGAGCTTCCGCGGACCGGTGACCTACCGCAGCCTCTCGCCCTCCCTGGTCCCCATCGGTTCAGTGGACGTGCGCAGCCTGTCGCCCTCTCTCGGACCCGTCCTGTCCCGCGGCCGCCAGTCGCCCCGCCTCCCGCGACACCTGGAGGAGCCGGAGGGCTAGACTCCCTCCTGCAGCCGAACGCTGGAACTGCACCTACGTTCTCAACCACTCAGAGGAACCTCATTATTTCAAGGTGGACAAACAGTGACTGACTAATCATCCCAAAACCAGGCTCTATCCTCATCTGATTCCAACATCTCAAAGCTGTGACCACACCAGGGCTCGAGTTCTGCATCCAAATGATCCTGATCGTTTACCTGAAACTTGAATGTGAGAACAAGAGATGTATCGGTACTATGTCTCTATCTCTATGGAATCTGCAGCATCTGTAGCATACTGTCACTCTTATGCATAAAGAACTAATGTCTAATCAGCaacacagcagctttacaggagaaggaaacAAATGTCTTAACTAGCAGTCTATAGTCTatag

Function

symbol description
fam117ba Orthologous to human FAM117B (family with sequence similarity 117 member B).

NR:

description
PREDICTED: protein FAM117B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230872.2 True 1703 mRNA 0.57 8 5561982 5576303

Neighbor

gene id symbol gene type direction distance location
LOC103028447 stk24,stk24b,LOC108411787,LOC108273064,LOC107709742,LOC107705591 coding upstream 290322 5248506 ~ 5271660 (+)
LOC103029080 LOC108411784 coding upstream 350603 5205106 ~ 5211379 (+)
LOC111193672 NA coding upstream 491279 5067275 ~ 5070703 (+)
LOC103034257 LOC108411001 coding upstream 757941 4648463 ~ 4804041 (+)
LOC103032560 calcrl,LOC107555409,LOC107743566 coding upstream 1045535 4462328 ~ 4516447 (+)
LOC103038682 cxcr4,LOC108411668 coding downstream 95209 5671512 ~ 5675221 (+)
mcm6 mcm6,LOC107748580,LOC107688862,LOC107660137 coding downstream 159277 5735580 ~ 5750160 (+)
LOC103036986 pnkd,LOC107660081,LOC107705600,LOC107584757,LOC107555416 coding downstream 212863 5789166 ~ 5801433 (+)
catip NA coding downstream 225473 5801776 ~ 5812906 (+)
LOC103036379 NA coding downstream 237367 5813670 ~ 5826658 (+)
G109001 NA non-coding upstream 249607 5312060 ~ 5312375 (+)
LOC111193718 NA non-coding upstream 273845 5284501 ~ 5288137 (+)
G108970 NA non-coding upstream 288092 5273571 ~ 5273890 (+)
G108931 NA non-coding upstream 437305 5120487 ~ 5124677 (+)
G108795 NA non-coding upstream 858644 4703015 ~ 4703338 (+)
G109031 NA non-coding downstream 6626 5582929 ~ 5583677 (+)
G109044 ica1l,ical1,LOC105912384 non-coding downstream 34388 5610691 ~ 5618665 (+)
G109055 NA non-coding downstream 111683 5687986 ~ 5688313 (+)
G109063 NA non-coding downstream 194792 5771095 ~ 5771478 (+)
G109072 NA non-coding downstream 251662 5827965 ~ 5836075 (+)
G108999 LOC108411783,LOC107584812,LOC107555440,LOC107709735,LOC107705592 other upstream 252225 5306050 ~ 5309757 (+)
LOC103029387 LOC103029387 other upstream 499863 5056538 ~ 5062119 (+)
wdsub1 wdsub1,LOC108411000,LOC105893302 other upstream 734264 4805229 ~ 4827718 (+)
G108773 march7 other upstream 970189 4586327 ~ 4591793 (+)
LOC111193715 NA other upstream 1204215 4308092 ~ 4357767 (+)
G109242 NA other downstream 588296 6164599 ~ 6166662 (+)
G109248 LOC108433704 other downstream 676907 6253210 ~ 6255057 (+)
rims4 rims4,LOC107666126,LOC107696477,LOC107708122 other downstream 1154841 6731144 ~ 6866913 (+)
blcap blcap,bc10 other downstream 1368462 6944765 ~ 6985492 (+)
G109527 NA other downstream 1691568 7267871 ~ 7269592 (+)

Expression


Co-expression Network