LOC103029080 (LOC108411784)


Basic Information

Item Value
gene id LOC103029080
gene name LOC108411784
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 5205106 ~ 5211379 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248794.3
ATTCGCATACATTTGCAAATTTAGTGACAGGCTCGTGCGAGTCAGTTCCTCTTTATGCAAGCCCTGAGTTTTAACCGCACGGAAGCCCCGCGTGCGAAAGCTCTGACCGTACACACACAAAGCCTGCACTGTGGGCTCGTCTCTCCGCGCGCGCGCGCACTCCAGCGCGTCAAAGACTGACGCCGATGACGTGAGGACTGTTTGCACGTGGGCCGAGGCGCTCCGAGCCCATAAACAAAGGCACGTTGCGCTCGAGCGCCAGAGAGGAGCTGCAGCTGTAGAGAAGAGCGCGCGAGAGCCTGGACCTGAGAGCGCTCGAGCTCCGCGCATCAAAAACTGAGAAATCTCAGTGAACGGAGTCACGGCGCTGCTCACCGGCCGAACGAGAACTGCAGCGATTCCCCGAGAACCCAAGAAACAGGTGTTTGGAGCCATGCCCTGTGTCCAGGCTCAGTACGGGAGCTCTCCTCCAGGCGCAAGTCCCGCGTGCCAGACGTACAGCTACagcgcggcggcggcggcggctgcGGCGGGAGAGTACAGCTGCGACCTGCTCACCCCGGAGTTCGTCAAGTTCAGTATGGATCTGACCAACGCCGAGATCGCCGCCACCTCCGCGCTGCCCAGCTTCAGCACGTTCGCGGAGGGCACCGGCGGCGCGGGCTACGACTCCAAAGCCCCCTGCCTGTACCAGGCGACGGCGCATTCCGGAGAGCACCTGTCCATCAAAGCCGAGGACATGCACTCGCACGGCTACCCGCCTCAAGCCGAGGACGGGACGTCCCACGGCGGATACTACAAACCGACCCCTCCTGGTTTCTCCTCCGCTTCTCAcgcgcctcctcctcctccggcgcCGCACCAccctcaccatcaccaccaccatcaccacgcGTGGGAGGACGCAGGTTCGCTGCACGCCTTCTCGCACGGCTACCTTGCCGCGTCTCACGTGATGGAGCAGCAGAGGAAAGACGCCGTGTCCAGGCTCTTCTCCTTTAAGCAGAGTCCCGCCGGGGCGCCGTCGTCCTTAGCCGCGTGCCACGTACGCTTTGACGGCGCTCCGTCCGCGCATCGGTCTCTGGAAAGCACGGGATTCACGGTGCCGACCGCGCTGAGGAAGCAGCACAGCTTGGGCTTTCCGCACCCGCTGCACGTCGGACACGGTCACGCGCACGGACACGGTCACGCGCTCAATGAGAGTCCTGTGAGCTCTCCGCCGTGCCGAGGGTCCCCGTCCAGCGAGGGCTTGTGCGCCGTGTGCGGCGACAATGCCGCCTGCCAGCACTACGGAGTACGCACCTGCGAGGGCTGCAAGGGCTTCTTCAAGCgcacagtgcagaaaaacgCCAAATATGTTTGCCTGGCCAACAAGAACTGCCCCGTTGACAAGAGAAGGAGGAACAGATGCCAGTACTGCCGATTTCAGAAGTGCTTAGTCGTGGGGATGGTGAAAGAAGTTGTCAGAACGGACAGTCTAAAGGGTCGACGGGGTCGACTACCATCTAAACCCAAGAGTCCGCAGGATGTCCCAAGCTCCTTATCACCCGCCAGTCTCCTGAGTGCCCTGGTTAGGGCCCACATAGACTCCAACCCCTTGATAGGACGCCTGGATTACTCTAAATTTCAGGTAAACCCCGAATATCATGGTGCTGGAGATGAAAGCCTCCACGTGCAGCAGTTTTATGACCTCCTAACGGGGTCCATGAGCATCATTCGTGGATGGGCAGAGAAGATGCCTGGATTTACTGACCTCCCCAAATGCGACCAGGAGCTGCTCTTCGAGTCAGCCTTTCTGGAGCTCTTTGTTCTGAGATTGGCGTACAGATCAAACCTGGCAGAAGATAAGCTAATTTTTTGCAATGGTACAGTCCTGCACAAGCTGCAGTGCGTGCGAGCCTTCGGAGAATGGATCGACTCCATCGTGGAGTTCTCTGTCAACCTTCAGAGCATGAACATAGACATCTCCGCCTTCTCCTGCATGGCCGCTCTTACAATGCTTACAGAAAGGCACGGCCTTAAGGAGTCCAAAAAGATGGAAGAGCTTCAGAGCAAGATTTTAAACTGTTTGAAGGAACACGTGACCTGCAACAGTGGTGGCCTGAACAGCCAAAGTTATTTGTCCAAATTGCTGAGCAAATTGCCGGAGCTGCGTACCCTGTGCACCCAGGGACTCCAGCGTATCTTTTACCTGAAGCTTGAAGACCTGGTTCCGACGCCTGCCATCATTGACAAACTCTTTCATGACACATTACCATTCTGAACTCGGAATTGCTTTCAGACTCTGACCTTTCCACTGGACTTTTCTGAAGCAACTGGCCATGCAGTGGTCATGGATGCACTGATACACAAAAAaggagacttttttttacacgCTCTTTGAAGTGCTTTAAGATGGGCACATTTTTTCATACTGTATTTGAAAAACCCTGACTCTTGTACTACGATGGTCTAGTACAGGTGGTCTAAAGCAGGAAAACCATGGCCCTGCTGAGCTTAGTGATTTTACATGCCTGATTTAACTTCTTTAATTACTAAAGAAGGGAAAAACCTACAATTCTAAGATGCTTTTCTGTGATTCTTTTTTGAAACCCTCTGCATCGAtgcacatttaattttttagcaGTAACACACTGATGAAGAATGAACACAAAAGTTATAATTGACAAGGGATCAAATAAGAGTAGAATTtgggtttaaatatttttgggtGGAAGTGTGAAAAtggtaaaaagtgaaaaaagaaaatttgatGACAAGCATGACAGGATTACAGCATGGCCttgtcctttttaaaacatttcttttaaggtgaaaagaaaatcttttcttgttttttttttttgtaaaaatgatgTAGGTTACAACAAGATagctaaacactaaactctgcagGACCTGTAGCCTAGCACTAACAGTTGTTGGACTGTTGTGAGTTGTTGTGATTTTGCACTGGGCAAGGAAGGGTTTGCAGTACTGGGAACTCTGACAGCACCAACTATTCCCAGGAGGCGGGTCCTGCCCTGTTCTCCCCGAATACAAGTGGAAAAATAAACAGCGGCACACTGAAGGAGCGAGGAATAAAGTACAAAAAGACTTACAACGtgacaaaagagagaaaattcaTCTAATCTCTTTTGTTGGAAAAGGGACAAACCATGTGCTTGTTAATAGTTTATCCATGGAAATATCTCATTGATTTAAAGCGcggtttaaatgtatttgtattgttaTGCGTCACATATTCATATAAGAAAAAAGTCACTGGACATTTAAAGGGAATTTGCATCTAATCTATCATTGTTCTGTATGGGTGGCCAGAAATGGATGGGTAGCCAGTTGCAAGCGGGGACCTAAGGAACGTGTTTCTGAATTAATACTCAAAACCTTGctgtcttttattattttttagcacATTTGTCCTTTTTTACAGTTCGCGGAAAATGGAAATATGCATGGAGTTATCTGCTAACTACGTCCTCCAGCACTTTGTAATTTCATATTGAAATAAGGTTTTTGCTTTTCGTTTCTTAACATTTCGCTCCGACCCGTGGTTTCTATCCAGCTATGAACTGATGTGGTTTTGCAGCGCAGGTCTGTGTGTATCATTGCGAAGTACCCGCTATGAACTTTAGTGCTTTGCAAAATAAATCGTGAATAAAATTCATATTCCTTCGA

Function

NR:

description
PREDICTED: nuclear receptor subfamily 4 group A member 2-like

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0021884 forebrain neuron development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K08558 NR4A2, NURR1; nuclear receptor subfamily 4 group A member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248794.3 True 3678 mRNA 0.50 8 5205106 5211379

Neighbor

gene id symbol gene type direction distance location
LOC111193672 NA coding upstream 134403 5067275 ~ 5070703 (+)
LOC103034257 LOC108411001 coding upstream 401065 4648463 ~ 4804041 (+)
LOC103032560 calcrl,LOC107555409,LOC107743566 coding upstream 688659 4462328 ~ 4516447 (+)
LOC103029388 col5a2,LOC107555399 coding upstream 951273 4178153 ~ 4253833 (+)
LOC103030560 LOC108430861 coding upstream 1058280 4133543 ~ 4146826 (+)
LOC103028447 stk24,stk24b,LOC108411787,LOC108273064,LOC107709742,LOC107705591 coding downstream 37127 5248506 ~ 5271660 (+)
LOC103040245 fam117ba,LOC108411669,LOC108272899,LOC107748582,LOC107555413,LOC107705530,LOC107660077,LOC107584760,LOC107688895 coding downstream 350603 5561982 ~ 5576303 (+)
LOC103038682 cxcr4,LOC108411668 coding downstream 460133 5671512 ~ 5675221 (+)
mcm6 mcm6,LOC107748580,LOC107688862,LOC107660137 coding downstream 524201 5735580 ~ 5750160 (+)
LOC103036986 pnkd,LOC107660081,LOC107705600,LOC107584757,LOC107555416 coding downstream 577787 5789166 ~ 5801433 (+)
G108931 NA non-coding upstream 80429 5120487 ~ 5124677 (+)
G108786 NA non-coding upstream 491801 4630091 ~ 4713305 (+)
G108795 NA non-coding upstream 501768 4703015 ~ 4703338 (+)
G108794 NA non-coding upstream 508697 4694723 ~ 4696409 (+)
G108788 NA non-coding upstream 516581 4641586 ~ 4688525 (+)
G108970 NA non-coding downstream 62192 5273571 ~ 5273890 (+)
LOC111193718 NA non-coding downstream 73122 5284501 ~ 5288137 (+)
G109001 NA non-coding downstream 100681 5312060 ~ 5312375 (+)
G109029 NA non-coding downstream 312168 5523547 ~ 5580796 (+)
G109031 NA non-coding downstream 371550 5582929 ~ 5583677 (+)
LOC103029387 LOC103029387 other upstream 142987 5056538 ~ 5062119 (+)
wdsub1 wdsub1,LOC108411000,LOC105893302 other upstream 377388 4805229 ~ 4827718 (+)
G108773 march7 other upstream 613313 4586327 ~ 4591793 (+)
LOC111193715 NA other upstream 847339 4308092 ~ 4357767 (+)
LOC111193711 NA other upstream 1377941 3788802 ~ 3827165 (+)
G108999 LOC108411783,LOC107584812,LOC107555440,LOC107709735,LOC107705592 other downstream 94671 5306050 ~ 5309757 (+)
G109242 NA other downstream 953220 6164599 ~ 6166662 (+)
G109248 LOC108433704 other downstream 1041831 6253210 ~ 6255057 (+)
rims4 rims4,LOC107666126,LOC107696477,LOC107708122 other downstream 1519765 6731144 ~ 6866913 (+)
blcap blcap,bc10 other downstream 1733386 6944765 ~ 6985492 (+)

Expression


Co-expression Network