LOC103030560 (LOC108430861)


Basic Information

Item Value
gene id LOC103030560
gene name LOC108430861
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 4133543 ~ 4146826 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248799.3
GACCGGTGACGTTTCCAGCAGCGGAGCGCGCTGAGGGGCGGAGCTCACGCGGAGAGGAGCGGGGATCCACGGGACTGAGGCGAGCGTGGCGGCGGGGTCAGTGTCGGTGTTATAGTAGGAGCTGGCGTCTTTGAATCTGGCTGGTTGTCTGTATACAAAGCATAGTCCTGGCATTACCGAGCGAGCGGGTGTCCTTTTCTTCCTGGTGGTTTGTGATGTATGAATGGATAGTTGACGGTCTGTCGTCGCTCTTCGTGCCTTTTTCTGGGGGGAGTTTGGCGGTGTGGCCTAGCGACGCGCACGGAGACGGTAAAGCGCCACTGaggggcagcagcagcagtacagAGCCTCCGCCGCGGCAACAGGAGCACTACAGGCCCGCCAAACGCAACTACCAGAGTGTCCACTCACCTGATGGTATTTCGGAACACCTGGAGATCAAAAGACCTAGACGAGATGTGATCGTCCGAGTTGTCAAGAAGACTTTTGCAGGCATTGCAGGGCTGTTTCGGCTACGACATCACAAGACTGGCCGTTATGGAAAGGACAAGGAGTATAAAGGCTCACAGGTTGGTCATGTTACCCTGATGGGAATTGATGAAATTCACAGCAACGGCCTTAATAAATGGATGATTAATGGTGATGTTAAAATGGaaaaACCAAGAGAAATGGGACTGACGTGTAAAGAGAGGACTGTGGTGAATTCCTTTCAGAATCCTCAGCCCCTTATAAAGAAGCCTGATGGAGCAGTCCTGTATATGGGGAACCAGGACAGACTGAGAGAGCGACCAGGGAGGCGGTCACTGCAGCTGCTACCTTCTCGTACTGGACTAGGGCTGCCTGAGATCGAGCCCCCCAGTCGCACCCACAAGCCCTGCCTTGCTGTAGAGGAGGCACTGAAGGAAAGTGATCGAGAACACTACAGGAAGCTGGTGGAGATGGTGTCAGAAAAATATTCCAAGAATAAACCACTACCGTTTGGAAGGGTGAAGCCACCAAACTCAACTTTTCCACTGGATGGTTACAAATCCTTTAACCATGCTTCTGAAATCAGCAAACCTGCTCCAATCAGAGTCAACCCCAATGTGCCTGTGTGGAGGGAATCCGCTTCTTTAAACCGAACCAAGGAAAGATTGGTTGAAGGCACTTGCAGTGCACGCCTCAATGATGCAAAAGTGAAGAAACCTGAAGAAAAGTCTTCCAAAAAGACTGTGCCAGTAGATGTGGATCTATCTGTTGAGGTAGAGACCAGGCTGAacctgaaggagagagaggcagtTGCAGTGTCCCAGCCGGATACGGGGAGGCGCTGTGAAGAGGAGTTCCCCAGACTCACTAAGGAAATGCAGCATGAGGTGAGTTCTGCTCTCGCACAGAGGGATCCAAACTTGGTCCTGAGCAGTGCTTTCAAACTCCGCATTACACAACGAGACCTGGCAACTCTACAGGAAGGCAGCTGGCTTAATGATGAGGTGATAAACTTCTACCTCAACCTGGTGATGGCACGCAGTGAGCAGGATGCTGGCGCTTTAAAAGTCTACTGCTTCAGCACATTTTTCTTTCCAAAGCTCCACGGGGGTGGCCATGTTGCCGTCCGGCGCTGGACCAAGGCTGTTGACCTCTTTCTACATGACATCATCCTCATACCCCTTCATCTGGGTGTCCACTGGTCTCTCATAGCTGTTGACTTCAGAACTAAATCTGTGAGGTCATACGACTCCATGGGCCAAAGGCATGATGACATCTGCAACCTGATACTGATGTATCTGAAAGAGGAGCACATGGTCAAGAAAGGCAAGGACCTGGAAGAGCTGAAGTGGACAGTGAGCAGCATGCGAGCCACTGAGATTCCCCAGCAGAGGAATGGGAGTGACTGCGGTGTGTTTGTATGCAAGTATTCGGACTACATTGCCCGTGGACATCCCTTTACCTTCAGACAGTGTCACATGCCCTATTTCCGGAAGGCGATGATCTGGGAGATTCTGAAGCAGAAACTGCTGCAGTAGGAGGACAGTGAACTGTCTGAACTTGACCAAAGCCCTGGACCACACCACACGTTCATCCTCCACAGTTTCTGTACTTACAGAGATTTAGAACAGAAAAACCTGATTCCATTCTAGTATATCTAGTCACTCCAGTCTTAAACTTTTCCAATCAGCCTAACAACTCATAgtgttgtttctttttctaCCAGTTACTGGATCTTTCGGTTGGCAGTTTGCTGATGGATAAGGCTAGACAGTAAGGCACTGGAATGGATTGGATAGTGGAGTTTTTTTTAGGGCACCTTTGTTAATGAAGCGCCTCATCATTCCAAGCATTATCCGAGCATTATCGCCCCCTAGGGGTCAGTCTGCATATACCTTCTGGATTTGGAGAGATATGGGCTCATGTTGGAGGATTTAAATGCACACAGAAGGAGTATAAGATAACGTTTTTTATGGTTGTGTTGGGCTGCTGAACTTCTTTTGAGAAGACTGCAATTCTTTTTTTCGGTGTGATTGGCCATGCAGTGTAGACTGACCCTAAGAATGGATATACAGTATCTATACACTGTCCCCCACATGTTTGGATGAGTAGGAAAAAGAAGATATTATTTATTGCTAAAGGAGTGCGCAAGTCTTAATTCAGCGGGGTGTGAAACACACTATGGACTGTTATTCGCTGACACCAATCGTAAGCAGTGGCAGAAGTGAATGTATATGAGAACTATGGTACTTGAGCTGTGTATTATTGCAGTGTAAAGCGACAGTATTTATTCAGTGGACTGGTTTCGTCCTAATGTGTACATACGTAAACTCAGCCCAAAGTGCCTTAATATaagtttttcctttattttggctacgttcacacagcaggtgaaagtggctaaaaatctgtttttttcacCAAACCCAATGCTTATTTTAGGCTATTTACACTATCTTTTGTGATGTGTGATTTATATGACGTGAAGTTTAATTTTCATCCTCACCAGAATCAGCTCTAAAGGATTTCCAGGGGCTGATGGTGGGCTTATCACCAAGAATGTGTTCAAAGCTTGCAGTAAAAATGGGCATAATATTCGACCTTgcatattttttggtttgtgtcctttctttaaatttcatttaaGCTTCTTATTGCTCTTTGATACTACAGCCATGCCCTGTGTCTGTGTTAttcatgttatttattttatttaaaacattcagtGACACAGCAATTGCAAGCCTTCTAAATAGCCTTCCAAATACCTGTTTCCTCTTTATTCTGCATGAAACCCTCCCTCactgctgttgtccattttcCCTTTTCCTAGACGTAAAGCTTTATTAATTCTGATCTGGCTTTGAGTCGCATCGCTGTGAATTGGAAATGTATCGGGTTTCAGTTCCACATAACTGAaattaaaaatatcagattcaCAGTACAAATCTGTGTCACATGATATAAcacaaaaaatctgttttggaccactattacctgctgtgtgaatgcagTTGTTAAATTTTAGTACTAATTAGCCTGAATATTTTTTTGAGTGTTAAGGAATGTTCAACACTTCTTAAACAGAACTGGAGACATGCtttgagtgtgtctgtgtgtatgctaatgagtgagtgtgtgagcacATGTGCTTGCCTGAATTTAGGTGTTACACAGGTCTGTATTATATGATTGGTGTGTATGATGGGTATGCACTCTTCACAATGAAGGtgctttaaatggttctttaagtAAAGCTGTAAAAGACCCACTTTTAGTTCTGTAGAGGACATAAAGTGGAGGTTCCTCAGAACTGTTGGGTCCTTTCACATCTAACTGTTTGTTTTGTATGGATTGGACTTTTTATTTTggtctgggaaaaaaaaaaaaaaggtgtgaaCGGTCCAGAAAAAGGACCAAAATTTGGGCCAaacaaaagaggtggtcttgaTCCAGATCTATTGAACCATTGTTCGGTTCATTTGCAGTGtaaaagcacttttctagatgtTTGAATAGATGTCTGAATAGGCTCTGTAAACAAACCGAACCATGGTTCTGTTAATCCAAGCTTTGGTCTGGCCTATGGTTTGTGGTACCTTTCTcacctgctgtttttttttttttcaccacaaCAAAGTGTCAAAGTCAAGACACAACAAGGTAGAGGTAAAAGCATGGTCATTACTCGAGGAACCATCCTATGAGGCACCTTTATTTAGAGTGTGACAGATCAGATTTCtctatatttttgttttcttttttgctcaTTACATGCTGTATTCAAACTGCAAGTGTTTTCTGGGTTCTATTTAATTAAACTGGAAGCAGTGAACAGTAATGAATGCCAAATGCACTTTCTGTGACCCTCAGAGTGCTTTTCTGTGACTGTTTTAGCGccactgttaaaataataaaaaaattcataATAAGACATAATTATGTTGATAGTAAAGTTGTAATACTTTGGGAATAAAGTCATGAAATTACACAGTAAAGTGCTATTGGGGAAAAGTCTCCAGGACACTGAGGaactttattaatcatttttatatcaGTTGCACCATTACTCAATAACCTGCACCATAAGTGCCAGATTGTCATTAGTATAAGGACTCTTGAAAAGTCTCAGTTTGTTTAACTACAATCCCTCTTCAAATGGCTTTGAGATTTCAACATCACTAGTCACGAACACTTGAGTTCTGCTGCTTTCTCCCTCAACCAAAGTATGTTTCTTTCACGTCCATCTGCGACATTTGCAGTTGTTTCAGTGCCATACACTACAGGAGATTGATTATTGATAATGAAAGTATAGCAAATGGTGTTTACTgttctttatataaaaaaaaaagctttagccTTATTCTTGAAATCTTATGACTTTATTCCTTAAagttgtactatttttatattctcaAACAGTGGCCCTAAAACTACAGTTTGCATTTCTAATGAAGGAATGGCCTTTTTAAAGGAGCAGCAAGTAGCATTTTGATCCTCAGTCAGTTGCATTAGTGCAGTGTGTCCCTGAATCACAGTTGACTGGATGATTTAGGTTTAATAGATTTAGTTTTTGCCAGAGTTCAACATTCCATGTCTGTAACCTTtgtgtaaaatacattattacctTTAATATAAATTTCTACTTTCTGCTCCTTCCATCAGAATTCTAGTCACTACAAAGttacatttctcattttgacTGAGCTTGAGTATTGACTTATCTTAACCTGTTCATATCTTGTGATCATTTGGAAGAATGAGGAGTGTGAGAGAGCTggacacctgtgtgtgtgtgtgtgtgtgtgtgttattacagACAGTTGGAGATGCTGAAGTCTACTATAAATGCGCTGATATGTTTTTGTCATACATGCAGATTGttggttatttttttaagtaataaaagAACAGTGGAGGAAAAAATA

Function

NR:

description
PREDICTED: sentrin-specific protease 2-like

GO: NA

KEGG:

id description
K08592 SENP1; sentrin-specific protease 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248799.3 True 5396 mRNA 0.43 17 4133543 4146826

Neighbor

gene id symbol gene type direction distance location
LOC103030027 LOC103030027 coding upstream 1683 4120948 ~ 4131860 (+)
atg9a atg9a,LOC107741391,LOC107677585 coding upstream 105259 4010720 ~ 4028284 (+)
LOC103026540 NA coding upstream 345042 3774202 ~ 3788501 (+)
LOC103032048 NA coding upstream 377834 3744263 ~ 3755709 (+)
LOC103026824 LOC103026824 coding upstream 394305 3724537 ~ 3739238 (+)
LOC103029388 col5a2,LOC107555399 coding downstream 31327 4178153 ~ 4253833 (+)
LOC103032560 calcrl,LOC107555409,LOC107743566 coding downstream 315502 4462328 ~ 4516447 (+)
LOC103034257 LOC108411001 coding downstream 501637 4648463 ~ 4804041 (+)
LOC111193672 NA coding downstream 920449 5067275 ~ 5070703 (+)
LOC103029080 LOC108411784 coding downstream 1058280 5205106 ~ 5211379 (+)
G108654 NA non-coding upstream 39132 4084654 ~ 4094411 (+)
LOC111193713 NA non-coding upstream 255860 3823519 ~ 3877683 (+)
G108599 NA non-coding upstream 276555 3849625 ~ 3856988 (+)
G108585 NA non-coding upstream 333018 3765928 ~ 3800525 (+)
G108743 NA non-coding downstream 350933 4497759 ~ 4503260 (+)
G108778 NA non-coding downstream 457868 4604694 ~ 4607409 (+)
G108784 NA non-coding downstream 469529 4616355 ~ 4616772 (+)
G108786 NA non-coding downstream 483265 4630091 ~ 4713305 (+)
G108788 NA non-coding downstream 494760 4641586 ~ 4688525 (+)
LOC111193711 NA other upstream 306378 3788802 ~ 3827165 (+)
G108354 p4hb,LOC107701207,LOC107553316 other upstream 1044816 3071525 ~ 3088727 (+)
anapc11 anapc11,LOC107553313 other upstream 1075982 3053906 ~ 3057561 (+)
c13h17orf67 cunh17orf67,LOC103372327,LOC106524488 other upstream 1249332 2881034 ~ 2884211 (+)
LOC103039651 znf207a,znf207,LOC105903839,LOC107698690,LOC107724436,LOC108444040 other upstream 1565592 2561314 ~ 2567951 (+)
LOC111193715 NA other downstream 161266 4308092 ~ 4357767 (+)
G108773 march7 other downstream 439501 4586327 ~ 4591793 (+)
wdsub1 wdsub1,LOC108411000,LOC105893302 other downstream 658403 4805229 ~ 4827718 (+)
LOC103029387 LOC103029387 other downstream 909712 5056538 ~ 5062119 (+)
G108999 LOC108411783,LOC107584812,LOC107555440,LOC107709735,LOC107705592 other downstream 1159224 5306050 ~ 5309757 (+)

Expression


Co-expression Network