LOC103032030 (zgc:110788,LOC108440097,LOC107711028,LOC107673477,LOC107726515,LOC107585211,LOC107580362)


Basic Information

Item Value
gene id LOC103032030
gene name zgc:110788,LOC108440097,LOC107711028,LOC107673477,LOC107726515,LOC107585211,LOC107580362
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 38996878 ~ 39000165 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249076.3
CGACAGGGCAGCCTGTGAAACATGACAGTGACCACTGTGTGGCGCTATGTGTATGAGACACGGCCCCCAGCAGAGCTCTCAGGTGAGGTTCTGTGACAGCATTATTGTGGCCTTCCTCAGATGAGAGCACTGACTGCACTCACAGAAACTTTATGAGGTGAATCAAGTTCTTCAGGAAGCTGCTTAAGCTTATAGATCATAGAGCTGGAGTGTTAAAGCCCATGGATAAACTAAGGGCTTTCCTGAGTGGTCGAGAGGGAAACAATGACAATCGTAATATATTACAGGTAGCCAACGAAGCGTCCACCCTGGGCTGGGGGACTCGGGTGAAAGGCTTTGTAATCTGTATGGCGATTGGACTGGGCTGCAGCGTCCTGgGAGTGTGTCTTCTATTTATTCCCAAGATAGGAGTGATTCTCTTCATTGTGTTTTACACATTTGGAAACATTTGCTCATTATTCAGCACCATGTTTCTGATGGGGCCAGTGAAGCAGATCAAGAAGATGTGTGATAAAACGAGAGCCTTTGCAACAGTTGTCATGATTACCTGCTTGGTGCTTACACTGTGTGCAGTTTTTTGGtggaaGATATTTGCCTTGACATTGCTGTTTGTTATTTTACAAGTCCTCGCATTTGCTTGGTATGGACTCTCGTATATCCCATTTGCAAGAGATGCTGTATTGAAGTTTTTCTCCATGATGTGCTCTATGTGCATGAAATGAAGTCCTCAGCACGTCTGCCCTACCTTAGGTCTATTTTAGCTTGGTTCATGTTTTACAGCACACTCACCAAACTAGCCAAAATGCTTACATATGGATCCTTTACAGATTAATTAggccttaaaaaataaatttacactTTTGTTTTTACCCTTTTGAATGTTCTATGGGACGCATATTGTAACTATATATGATTACACCTAAATTATCTGTGCTGATAAAAGGAACCTGTTCAAGTTCTTTGTTGGGTCAAGCTGATGTTTAAAGATTTGTGCATATGTAGACTAGAAACTTTGAATACTGCTTTCTTTTTTACTCTTCTGTTGTTTCTACAGTTATGTTCAGGTCTGTGTAACATTGTAGAGTCAGCAAATGTACCTCAAATAACCTAAAGAATAGGATACTTTACAAAGTAAGGCCTAAATGTACATGTAATGCTGggtaaactgtaaataaattaatgtattaattacatAC

Function

NR:

description
PREDICTED: vesicle transport protein SFT2B-like

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249076.3 True 1196 mRNA 0.40 8 38996878 39000165

Neighbor

gene id symbol gene type direction distance location
chd1l NA coding downstream 412 38972149 ~ 38996466 (-)
LOC111193785 NA coding downstream 15733 38978736 ~ 38981145 (-)
LOC111193784 NA coding downstream 25139 38964132 ~ 38971739 (-)
zranb2 zranb2,LOC107685308,LOC107726518 coding downstream 485500 38504126 ~ 38511378 (-)
ptger3 ptger3,LOC107585167,LOC107711104,LOC107673459,LOC107682156,LOC107734856 coding downstream 495726 38490785 ~ 38501152 (-)
LOC103031712 tmem45a,LOC107685333 coding upstream 2537 39002702 ~ 39011754 (-)
lnp1 lnp1 coding upstream 12873 39013038 ~ 39025162 (-)
LOC111193786 NA coding upstream 271625 39271790 ~ 39282915 (-)
uhmk1 uhmk1,LOC107692420 coding upstream 1619317 40619482 ~ 40636689 (-)
LOC103034848 NA coding upstream 1755183 40755348 ~ 40777657 (-)
G116923 NA non-coding downstream 368763 38626779 ~ 38628115 (-)
G116933 NA non-coding downstream 370452 38625623 ~ 38626426 (-)
G116927 NA non-coding downstream 400083 38595480 ~ 38596795 (-)
G116926 NA non-coding downstream 403385 38593068 ~ 38593493 (-)
G116906 NA non-coding downstream 509247 38487226 ~ 38487631 (-)
G116946 NA non-coding upstream 478 39000643 ~ 39002353 (-)
G116954 opa1,LOC107585173 non-coding upstream 46182 39046347 ~ 39049565 (-)
G116961 NA non-coding upstream 150663 39150828 ~ 39151231 (-)
G116964 NA non-coding upstream 185350 39185515 ~ 39185756 (-)
G117002 NA non-coding upstream 361305 39361470 ~ 39361798 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other downstream 33184 38953162 ~ 38963694 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other downstream 97432 38630637 ~ 38899446 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other downstream 612280 38381270 ~ 38384598 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other downstream 748254 38233474 ~ 38248624 (-)
G116581 eif4b,LOC108441049 other downstream 1951090 37041361 ~ 37045788 (-)
LOC103028549 NA other upstream 284052 39284217 ~ 39291028 (-)
LOC103040080 LOC108440156 other upstream 1360154 40360319 ~ 40363960 (-)
LOC103034527 NA other upstream 1731131 40731296 ~ 40769682 (-)
LOC103041916 LOC107758363,LOC107684070,LOC107692412 other upstream 1815968 40816133 ~ 41017814 (-)

Expression


Co-expression Network