LOC103034578 (LOC108436926,LOC107749412,LOC107558139)


Basic Information

Item Value
gene id LOC103034578
gene name LOC108436926,LOC107749412,LOC107558139
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035910.1
NCBI id CM008313.1
chromosome length 38842236
location 33463282 ~ 33470308 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246019.3
AAAGGGGGAGATTTGAAATTAAACAGGTTGTGTTAGTCAGAGCGGCGGTCGGTGTGGAGGTCAGTGATTATAGCTAGAAAAGAAGCTGAAAGGGTTTTAAAGTCAGattttgtttcctttatttgtttaaatataatttcaagTTTTATTCGGAGCTGTTTGCCGCGAGAAGGCGCTTTGAGTTGGTTTATTTTCAGCTCTGTGTGGATGTTAAACCTCtgctgagagagggagagagactgcGGTGGAGCTTTTAAATAGACATGGACACTGCTGCCAGAATCAGATCCTCTAAAGACCTGGCCGTTCGAAAGGCAGACAGTGAAAAGGGTTTAAGTGATGGACCAAAGCGGATTCCTGTAACTCAGAGCTGCCATAAACCAGTGCCTACTCCAAGTCACACACATGTTCTTGGGGTGTCACAGGGGCCACAGCGTGTGCAGCGGCCAAAAAGTCAGAATAAACCAGCGGTCAACGTGCCTTCTGTGAAAACTCTGACTAGTGCAGATCAAAACATACGCCCAACTCAGCCTCAGCCAGCCCCTGCACCTCAAGCTCAGCCAAAACAACTACAGCAGCAGAGCCAGCCAAAACCCACAGCTAACGTTAAACCTgtcaatgctgctgctgctgaacctaGCAAACCAGACAAGCCTAGCCAAAAGCCTGCTAGTGGAATTGCCATTCAGGCCAGTTCAAaGATGCCATGGAGCTTGGAGAACTTTGATATTGGCAGGGCGCTGGGGAAGGGCAAATTTGGGAGTGTGTACCTCGCCAGGGAGCGACAAACCAAATTCATCCTTGCCCTGAAGGTGCTGTTTAAAAAGCAGCTGGAAAAGGCCGGTGTGGAGCACCAACTGCGGAGAGAAGTGGAGATCCAGTCTCATTTAAGGCATCCCAACATCCTCCGTTTGTATGGCTACTTCCATGACTCTGCACGTGTATATCTCATACTGGAGTTTGCTCCCAAAGGAGAATTGTATGGAGAGCTGCAACGCTGTGGGATGTTTGATGACCAGCGCAGTGCCACATATATAATGGAGCTGGCTGATGCGCTGCACTATTGCCATTCAAAGAAAGTGATCCACAGAGACATTAAACCAGAGAATCTATTACTGGGGGCCAACGGAGAGCTAAAGATTGCTGATTTTGGGTGGTCGGTCCACACACCTTCTTCCAGGAGGTCGACTTTGTGTGGCACCCTGGACTACCTTCCTCCAGAGATGATCGAGGGAAAGACTCATGATGAGAAAGTGGATCTCTGGAGTTTAGGGGTGCTCTGCTATGAGTTTCTGGTTGGACGGCCACCCTTTGAAACTAAGAGCCATGAGGAAACCTATCGTAAGATCTCCAGAGTTGAGTTTACCTATCCGGCCCATGTAAGCGAAGGAAGCAGAAATTTGATCAATGGGCTTTTGAAACACAACCCCATGCACAGGCTTCCCATCCAAGGAGTCCTGACTCACTACTGGGTTGTGGAACACTCCACCAAAAAGCCCACTAGTTTCACACCAGATGCCGCACCCGGACAGTGAGGGTGCATGTTCTTTGGCTGCTGGGAAGAAACCAACTCTGTGGAATATTCGTGCTTTTGGCCGGAAGCTTGAGACTGACTACATCCTCAGAACTTTCAAAATACTATGTGTTTGTCACTGTGCTAATTGTTCCACTCTTGTTctgctctcttcttcttttgtaaatatttatctgtttacgAATTATGAAATGTAATTTTACCTGCTACTACTTGaaacaataaacatatttttagtgTTGCTGGCTACAGTGAGGGAGATCATTTCAACACTTTAGGCTATGTTGGTCAATTCTTTGCAAGCTTAATTGGAATGGAAATTAAGGGCAGATTGCAGACTtatgtgaaaatatatttatacaccaGAAAAGTGTTGAGTCCCCAGATAAGTGCAATATGTGAATATGGTCTGTTTAGGGCCAGGTGCTTTTTGCTTTAATTATTTGGGGTCTGTGTTTGCGCGTGCGTAAGGTCTCCCCCCTCCCTCTCCATATTAATCAGTTTTCTTTACcactcttaaataaataaaatacactgaaataa
>XM_015604986.2
TGAAATTAAACAGGTTGTGTTAGTCAGAGCGGCGGTCGGTGTGGAGGTCAGTGATTATAGCTAGAAAAGAAGCTGAAAGGGTTTTAAAGTCAGattttgtttcctttatttgtttaaatataatttcaagTTTTATTCGGAGCTGTTTGCCGCGAGAAGGCGCTTTGAGTTGGTTTATTTTCAGCTCTGTGTGGATGTTAAACCTCtgctgagagagggagagagactgcGGTGGAGCTTTTAAATAGTGAGACATGGACACTGCTGCCAGAATCAGATCCTCTAAAGACCTGGCCGTTCGAAAGGCAGACAGTGAAAAGGGTTTAAGTGATGGACCAAAGCGGATTCCTGTAACTCAGAGCTGCCATAAACCAGTGCCTACTCCAAGTCACACACATGTTCTTGGGGTGTCACAGGGGCCACAGCGTGTGCAGCGGCCAAAAAGTCAGAATAAACCAGCGGTCAACGTGCCTTCTGTGAAAACTCTGACTAGTGCAGATCAAAACATACGCCCAACTCAGCCTCAGCCAGCCCCTGCACCTCAAGCTCAGCCAAAACAACTACAGCAGCAGAGCCAGCCAAAACCCACAGCTAACGTTAAACCTgtcaatgctgctgctgctgaacctaGCAAACCAGACAAGCCTAGCCAAAAGCCTGCTAGTGGAATTGCCATTCAGGCCAGTTCAAaGATGCCATGGAGCTTGGAGAACTTTGATATTGGCAGGGCGCTGGGGAAGGGCAAATTTGGGAGTGTGTACCTCGCCAGGGAGCGACAAACCAAATTCATCCTTGCCCTGAAGGTGCTGTTTAAAAAGCAGCTGGAAAAGGCCGGTGTGGAGCACCAACTGCGGAGAGAAGTGGAGATCCAGTCTCATTTAAGGCATCCCAACATCCTCCGTTTGTATGGCTACTTCCATGACTCTGCACGTGTATATCTCATACTGGAGTTTGCTCCCAAAGGAGAATTGTATGGAGAGCTGCAACGCTGTGGGATGTTTGATGACCAGCGCAGTGCCACATATATAATGGAGCTGGCTGATGCGCTGCACTATTGCCATTCAAAGAAAGTGATCCACAGAGACATTAAACCAGAGAATCTATTACTGGGGGCCAACGGAGAGCTAAAGATTGCTGATTTTGGGTGGTCGGTCCACACACCTTCTTCCAGGAGGTCGACTTTGTGTGGCACCCTGGACTACCTTCCTCCAGAGATGATCGAGGGAAAGACTCATGATGAGAAAGTGGATCTCTGGAGTTTAGGGGTGCTCTGCTATGAGTTTCTGGTTGGACGGCCACCCTTTGAAACTAAGAGCCATGAGGAAACCTATCGTAAGATCTCCAGAGTTGAGTTTACCTATCCGGCCCATGTAAGCGAAGGAAGCAGAAATTTGATCAATGGGCTTTTGAAACACAACCCCATGCACAGGCTTCCCATCCAAGGAGTCCTGACTCACTACTGGGTTGTGGAACACTCCACCAAAAAGCCCACTAGTTTCACACCAGATGCCGCACCCGGACAGTGAGGGTGCATGTTCTTTGGCTGCTGGGAAGAAACCAACTCTGTGGAATATTCGTGCTTTTGGCCGGAAGCTTGAGACTGACTACATCCTCAGAACTTTCAAAATACTATGTGTTTGTCACTGTGCTAATTGTTCCACTCTTGTTctgctctcttcttcttttgtaaatatttatctgtttacgAATTATGAAATGTAATTTTACCTGCTACTACTTGaaacaataaacatatttttagtgTTGCTGGCTACAGTGAGGGAGATCATTTCAACACTTTAGGCTATGTTGGTCAATTCTTTGCAAGCTTAATTGGAATGGAAATTAAGGGCAGATTGCAGACTtatgtgaaaatatatttatacaccaGAAAAGTGTTGAGTCCCCAGATAAGTGCAATATGTGAATATGGTCTGTTTAGGGCCAGGTGCTTTTTGCTTTAATTATTTGGGGTCTGTGTTTGCGCGTGCGTAAGGTCTCCCCCCTCCCTCTCCATATTAATCAGTTTTCTTTACcactcttaaataaataaaatacactgaaataa

Function

NR:

description
PREDICTED: aurora kinase C-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K11481 AURKA; aurora kinase A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246019.3 True 2077 mRNA 0.46 9 33463282 33470308
XM_015604986.2 False 2068 mRNA 0.46 9 33463295 33470308

Neighbor

gene id symbol gene type direction distance location
nop56 nop56,LOC107661748 coding upstream 52849 33401338 ~ 33410433 (+)
LOC103034246 LOC108278657,LOC108437744,LOC106565181 coding upstream 64835 33386247 ~ 33398447 (+)
tpgs2 tpgs2 coding upstream 95719 33355147 ~ 33367563 (+)
celf4 celf4,LOC107584536 coding upstream 167528 33156044 ~ 33295754 (+)
LOC103039386 LOC103039386,LOC108437682,LOC108279294,LOC107661672,LOC107675632,LOC107584535,LOC107736863,LOC107739687 coding upstream 1023882 32428412 ~ 32439400 (+)
nedd4l nedd4l,LOC108438193 coding downstream 114013 33584321 ~ 33718588 (+)
grp NA coding downstream 347269 33817577 ~ 33824484 (+)
LOC111188203 NA coding downstream 1005042 34475350 ~ 34476683 (+)
LOC103023802 LOC108438099,LOC107741960 coding downstream 1031274 34501582 ~ 34526554 (+)
LOC103036996 rxra coding downstream 1380683 34850991 ~ 35134718 (+)
G126777 NA non-coding upstream 12955 33425273 ~ 33450327 (+)
G126784 ubap2 non-coding upstream 17163 33426767 ~ 33446119 (+)
G126770 NA non-coding upstream 28883 33358647 ~ 33434399 (+)
G126781 ubap2 non-coding upstream 45589 33414562 ~ 33417693 (+)
G126742 NA non-coding upstream 147127 33301435 ~ 33316155 (+)
G126798 NA non-coding downstream 61803 33532111 ~ 33535244 (+)
G126834 NA non-coding downstream 210804 33681112 ~ 33682962 (+)
LOC103037053 NA non-coding downstream 335808 33806116 ~ 33812224 (+)
G126902 NA non-coding downstream 381657 33851965 ~ 33860086 (+)
G126943 NA non-coding downstream 549505 34019813 ~ 34020034 (+)
G126708 NA other upstream 599826 32862881 ~ 32863456 (+)
G126702 NA other upstream 629816 32832962 ~ 32833466 (+)
G126632 NA other upstream 1060451 32402190 ~ 32402831 (+)
G126613 LOC108415780 other upstream 1169538 32293364 ~ 32293744 (+)
G126040 LOC108436799,LOC104955091,LOC103374273,LOC100049520,LOC107397331,LOC101074260 other upstream 3603065 29856038 ~ 29860217 (+)
trnam-cau_22 NA other downstream 17742 33488050 ~ 33488121 (+)
G126903 lman1,LOC107662211,LOC107739740 other downstream 395196 33865504 ~ 33875369 (+)
LOC103022855 hcn1,LOC108438107,LOC100334297,LOC107085810,LOC107749006,LOC107662227,LOC107701955,LOC107719071 other downstream 619782 34090090 ~ 34286886 (+)
LOC103040215 esm1 other downstream 987673 34457981 ~ 34464996 (+)
LOC103023469 NA other downstream 1008318 34478626 ~ 34482387 (+)

Expression


Co-expression Network