G196415


Basic Information

Item Value
gene id G196415
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 9720783 ~ 9721270 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU266514
TTTTATGCGGGGTTCCGCGGTCGTGCTGCGtcgtttatttggatgatgtcTTGGCGCACGGAACCGACTTCGACTCCGCACTGTCTCACCTTGAAATGGTGCTCGGCGCGATTCAGGCGGCTAACCTGAAGCTCAATCCGGCAAAGTGTAATCTGCTAAGGCAGCGCGTGAGCTTCCTGGGCCACGTAGTGAGCGGTGCTGGCGTGGAAACCGATCCCAAAAAGACGGAGGCGGTCCGTGACTGGCCCACACCGCGAGACGCAAAAATGGTTCGCAGCTTCGTGGGGCTCGCCTCGTATTACAGGCGGTTTATTAGGGGGTTCGCGGACGTGGCAGCGCCGCTTCATGCTCTGACTAAGCCTAGTGTGAAATTCCGCTGGTCTGACGAGGCGGAGCGGGCATTCGAGGAGCTAAAAAGCCGCCTGTGCAATGCTCCGATTCTAGCGTATCCGAAGGTGTCTGAgagtttcattgtggatactgatgcG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266514 True 488 TUCP 0.57 1 9720783 9721270

Neighbor

gene id symbol gene type direction distance location
LOC103047595 cers2,LOC103047595,LOC108437916,LOC107750802,LOC107599505,LOC107693338,LOC107678801,LOC107739494 coding upstream 42963 9642177 ~ 9677820 (+)
LOC103027509 NA coding upstream 129873 9560563 ~ 9590910 (+)
LOC111195503 NA coding upstream 161676 9544700 ~ 9559107 (+)
LOC103023391 hcn3,LOC108437924,LOC107739502,LOC107656480,LOC107599514 coding upstream 372066 9339117 ~ 9348717 (+)
trnav-cac_44 NA coding upstream 769218 8951493 ~ 8951565 (+)
LOC103044437 trim46,trim46b,LOC108437912,LOC108272350,LOC107589413,LOC107750805,LOC107693334 coding downstream 265532 9986802 ~ 10014297 (+)
LOC111195551 NA coding downstream 459183 10180453 ~ 10181232 (+)
trnap-ugg_5 NA coding downstream 493721 10214991 ~ 10215062 (+)
trnap-agg_7 NA coding downstream 493878 10215148 ~ 10215219 (+)
trnap-agg_8 NA coding downstream 494079 10215349 ~ 10215419 (+)
G196411 NA non-coding upstream 8142 9711890 ~ 9712641 (+)
G196396 NA non-coding upstream 111962 9607522 ~ 9608821 (+)
G196329 NA non-coding upstream 293239 9377917 ~ 9427544 (+)
G196327 NA non-coding upstream 338234 9381750 ~ 9382549 (+)
G196317 NA non-coding upstream 381964 9338069 ~ 9338819 (+)
G196417 NA non-coding downstream 2533 9723803 ~ 9724329 (+)
G196416 NA non-coding downstream 3843 9725113 ~ 9727004 (+)
G196418 NA non-coding downstream 9508 9730778 ~ 9734673 (+)
G196421 NA non-coding downstream 20070 9741340 ~ 9741835 (+)
G196464 NA non-coding downstream 52238 9773508 ~ 9773769 (+)
LOC103046684 LOC106605923,LOC107589412,LOC107582081,LOC107699547,LOC108429942 other upstream 16074 9700740 ~ 9704709 (+)
LOC103046991 celf3a,LOC108437918,LOC107750801,LOC108272714 other upstream 81867 9603327 ~ 9638916 (+)
mrps21 mrps21 other upstream 181135 9534429 ~ 9539648 (+)
G196232 NA other upstream 1040813 8679284 ~ 8679970 (+)
LOC103033741 grik5,LOC108433750,LOC107549838,LOC107752523,LOC100331381,LOC107666346 other upstream 1315314 8143873 ~ 8405469 (+)
G196419 NA other downstream 19089 9740359 ~ 9740768 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other downstream 53109 9774379 ~ 9888217 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other downstream 336869 10058139 ~ 10061099 (+)
G196633 NA other downstream 770276 10491546 ~ 10492101 (+)
samd14 samd14 other downstream 1289771 11011041 ~ 11031269 (+)

Expression


Co-expression Network