G854


Basic Information

Item Value
gene id G854
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 2779649 ~ 2779882 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU1143
cgccgagtggtccagcggtctaaggcgctgccactatgagcaggaggttgcaggtttgaaccccagctcatgcagctttgccatcaagctgccggcgtcagagggagcaaaattggccctgctccctctgggtgggtagatggcgctctctccccccATCAGTCCtagggtaatgtctgcagcacagggcgtctgtgagctgatgtaccggagccgagacgctgcgctttcctc

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU1143 True 234 lncRNA 0.43 1 2779649 2779882

Neighbor

gene id symbol gene type direction distance location
LOC103035527 prrx1,prrx1a,LOC108444493,LOC107693734,LOC107722649 coding downstream 61614 2700358 ~ 2718035 (-)
LOC111193163 NA coding downstream 237308 2539816 ~ 2542341 (-)
LOC103037050 LOC108432507 coding downstream 357008 2405363 ~ 2422641 (-)
LOC103036044 LOC108432506 coding downstream 384284 2376247 ~ 2395365 (-)
LOC103037376 NA coding downstream 406694 2324606 ~ 2372955 (-)
fam129a NA coding upstream 55430 2835312 ~ 2892356 (-)
LOC103032964 LOC108444491,LOC107722586,LOC107718136,LOC107693739,LOC107589867 coding upstream 136907 2916789 ~ 2928066 (-)
LOC103034573 pla2g4a,LOC107718137,LOC107677770,LOC107693742,LOC107722605,LOC107589895,LOC107594671 coding upstream 206451 2986333 ~ 3036834 (-)
c1h1orf27 cunh1orf27,LOC103031066 coding upstream 319964 3099846 ~ 3114769 (-)
LOC111193343 prg4 coding upstream 383829 3163711 ~ 3179594 (-)
G850 NA non-coding downstream 31369 2748048 ~ 2748280 (-)
G825 NA non-coding downstream 129662 2616083 ~ 2649987 (-)
G838 NA non-coding downstream 130636 2645262 ~ 2649013 (-)
G824 NA non-coding downstream 165836 2613341 ~ 2613813 (-)
G822 NA non-coding downstream 171927 2607105 ~ 2607722 (-)
G881 mblac1 non-coding upstream 52241 2832123 ~ 2833844 (-)
G952 NA non-coding upstream 215948 2995830 ~ 3000663 (-)
G958 NA non-coding upstream 269526 3049408 ~ 3049755 (-)
G963 NA non-coding upstream 281061 3060943 ~ 3061199 (-)
G977 pdc,pdca,LOC108277616,LOC107693745,LOC107594646 non-coding upstream 313063 3092945 ~ 3149212 (-)
G807 NA other downstream 179138 2550216 ~ 2600511 (-)
znf414 NA other downstream 345248 2423713 ~ 2434401 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 851394 1920480 ~ 1928255 (-)
yipf1 yipf1 other downstream 906522 1864515 ~ 1873127 (-)
LOC111197534 NA other downstream 1923489 855579 ~ 856160 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other upstream 130872 2910754 ~ 2970340 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other upstream 614322 3394204 ~ 3445386 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 1102488 3882370 ~ 3909671 (-)
G1308 NA other upstream 1319883 4099765 ~ 4101566 (-)
LOC111193794 LOC108442858 other upstream 1487119 4267001 ~ 4271970 (-)

Expression


Co-expression Network