fam129a


Basic Information

Item Value
gene id fam129a
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 2835312 ~ 2892356 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672993.1
AGAtgaagggatggagagagaggttTGCTTGTTTGCTTGGCTCTTTCTCTTACAGCCACTCTGTGTTTGACAGCCACGGCAAGCGGACCTGAAAGAGACCTGTCTTCACCATGGGAGTGTCTTCCTCCAGTCTTTTGGACGAGAGCAAAGCCAACTATATCAGAGgGAGAACAGAAGCCGAGCTGAAGAACTTCAGTCCTCATTATAGGAGACAGTACTGCGTGGCCTTTTTCTCACAGCTGCATGATGAAGTGGAGCAGCATCGCACCGGACCAACACAGCTCCTCAAACACAAGGAACCTTCCCAGGCCTCGGCTGTGCTGTATAAGAACAGCGTCCAGCACTTCGATGACAGCAGAAAGTGGAAGGAGAGGTTTGTGGTGGTCCGATCAGATTACAGCCTGGAGCTCCACGACAGTCAGGAGACGTTCAATAAAGGAACTCCTGCACGACACACGCTCCTGCTAACAGGCGGCACTGTGCTGACATCAGAGGAGAAATACTCAGCTCTAGTGGACAAGGCCTTCCCCGACCTCAACAGCTCTAAAGAGGACGGATCACCACCTGTGGTAATGGTTCCTGGTCCATTTGCTGTGTACCTCAGACTGCCATACAGGAGAGACTGGTACTTCAGCTTTCAGCAGGAGGAGCAGCAGATCCAGTTCATCTCCATACTGTCCGACTGCATCCGGCACCAGAACAGCGacTTTCTGAAGAAGACTGAATGTGATACCCTGGCCTTCCTGAAAGCCATTCATTTCTACAGGCAGGAGAAGGGTCATTACGAGTCCTGGGAGATGCTGGTGGGctcggactttcaggtgctGGCCAACCATGTGATGGAGGAGCTCCTGCCCTCGCTGCAGACGGAGCTGCTGCCCAAGCTGAAGGGGAAGAAGGtggagaggaagagagtgtgGTTCACGACGGTGGAGGCTACATATGTTCTAGTGCAGGAGCAGCTGAGGGAGGGGCTACAGAGCCTGAAGGAGGAGTGCAGGGAGGCGGCCAAACAGCAGGAGGCGCTCATACGCTCCCACATGGATCAGATCATCAACTCCCGCACCTTCCTCCAGACCAAACTACAAGgacTGGTCTCAGAGCCGGCTGTGAAGTTCTGTTCTGAAAGTGTGGCCCCGTATCTGGCGTCTATCCTGGAGGAGCTGATGGGGCCGGTGAGCTCAGGCTTCCAGGCTGTGAGGCAGCGCTTGGAGGCTGAGCTGAGCCGGGTCTGCAGGGACTTCACTCCGGGAGGAGGTCCAGAAGAACTCACTAAAACGCTGGACGAGGTGGGTCGTGCCCAGCTGGAGGACTGTTATCAGCATGTGACCGTCCTGAAGGAGCAGCTGCAGGAGCTCAGGAACCGCTTCAAATTCTCCAATTCCACACTGCTGGTTCACACCACCCAGAGCCACATGCAGCAGcTGATGGAGAACGCTGTATACACATTCGACACGCTGCTTCAACCGGCCTTTAAGGACAAACCGGACAAACTGGCCACAGTGATGGAGAAAGCCAAACTCAGAGTGCTGAAGCAATATGACTATGACAGCAGTACAGTGAGGAAGAAGATTTTCCAGGACGCTCTGGTGGACATCACCCTGCCAGCCATCAGGAGGAACCTGGCCCCCTCCTGCAAAACTGAGCTGCAGAACTATGAGCAGTACATCTTCGCTGATTACACAAACTTCATTCAGGTGGAGAACGTCTACGAGGATTTACTGCTCAACATCCTGAATAACGAAGTCAACAAAGTGGTGAAGGAAGCTGCCAGCCTGAAGAAGAACAACCTGTTCGTGGACAGCACGGACCTGCAGTGCATCAGTCAGAGCAGCCTAAACGACAGCCGGACGCCCCCTCTCTCCGCCCCATCCAGTCCATCCAAAGTCCCCCTCACACGAAAACCTGAGGAGAACACCACCTCCCCATTGGTGGGCAATGGCTGCTTGGAGAGCCAATCAAAAAAGCAGAGCAACCAAGACATTCCAGCGGAGGAGAACCAAGAGATTCCTGCTGAAGCATCTAGTCCTGGAGACTCTTCACCAGCATCCGAGGTTGCAGCAACTGCTTCTGAGGCTGAATCCAAGACTGAGGTGTCTGCAGCTGTTGATCCATCTTTGGTTCCATGTGATACTTCTGCTGATAAACCTGATGTGGCTCCATCCACCCTAGAAGCTGAAGCTCAGAGTGAAGCTGAAAGTCAGAGCGAAGCCGTGACGGTCACAACTTTGGCATCGTTGAGTCTCAACGATTGCCCGACGATTGTCATATCAAAGGATCCCGGATCGTCCAGTGAACAACAGCAAGCTACAGACAAGGCTGTATATCTTATCCCACCAGCTGGAGTGGCAGCAGGAAGTGCAGTTCCTCTTGCAGAAGATGaggagaaggaaaacatggaggCTCAGACGGTCTCAGAACCAGAAACATCAGCTCCTGTTGAGCCATGCATTGGTACACCCAAACCTGAGGCTTCCACCATTGAAGTTCCAACAGATTCAGAGTCTAAAGACAATGACGACCCAACGTCTCCAATGGAGACCACGTCTTCTGATCCATCTGGTCCATCTGTTGACTGCACAGTCAGAAGCGAGCCATTGATCCAGAGTGATGCAACTGGGAAGGACACTGTGGTCAATGAAAAAGATTCCCAAGAACTTTCCTCCAACACAGTTCCTCTAGTTGAGGGCGAAAACCTTCCAGAGTCAGTGCCCATTCTAAGTGGAGGCGATGCGGACTGCTCAAGCTCTTCAGATGCAGATGGAGAAGAGCCGCTGGACTGCATAAAGGCCATCAGAGATCTGGTGGTGGAGGTCATTGAAGTGGAGGACATCGTAAAGCCTTGTCCAACCAGCAATGAAGCTTAGGATGGAggcctttatttaaaataagaaatgaacCTCTGGCTGTGTTAACTGACTCAACATGACTAGAggtctagggctgcaacgattagtcgatataatcgataATGTAGACTATAAAAATTTGTTGACTGCAAACTTCATTACTGACTAATCAAGTCAATTTGTAACTGcagtgcattactaaaagtgctgATGACAGAAACACAATGCAATGTTGGAGGGTTCAGGGCTGTTCAGCTCATCCTgtgtctgcaaaaaaaaagtgcccaaacacaatcgattacacatttactcactaaatatcagaacatttcacATTTGTGAGCATTTGAATTACATGTTTTGCTGTTTCTGTCATTTTGAAACAGAACCTGTACACACAGGAAGCATGGCATGGTGGGCATGGCAAAAACAGTCagtcgactaatcgactaataaGAAGAATAATTATCAGATTAGTTGacaaccaaaataataattagttgcagctctactgacaacataaacaaactgcaaaaaacaacaacagacaggACTGGGTTTTATACTTACTAATGCTGATAACATAACATAGACTGGAATGGCAtttgcttttgtattttattgtaactgAAAACTTATATTACATTCTAATATTTTGTACACTGACATTTTGCGATTACGAAATATAAATATCAGATTTTATACAAAATTTGTTTTTAGTAAATGTGTAAAGatcagaatgaatgaatgaatgaagctaTGGACAACGGAAAAATCTTAATGTAATTTTTGAATTTatctttaaatgcatttttaatgaaataaatgtaCGTTTTTGGGCCCCATAAAGCAAGACGTAAACCTCACCCATGATTTACAGTTAAGTGTAATCTGATATGAGCAAAACACTGTACATAGAAAAATCAAACCAGTGGccttttatattaaaacaataaacatttttgtaccAACA

Function

GO:

id name namespace
GO:0048884 neuromast development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672993.1 True 3822 mRNA 0.48 14 2835312 2892356

Neighbor

gene id symbol gene type direction distance location
LOC103035527 prrx1,prrx1a,LOC108444493,LOC107693734,LOC107722649 coding downstream 117277 2700358 ~ 2718035 (-)
LOC111193163 NA coding downstream 292971 2539816 ~ 2542341 (-)
LOC103037050 LOC108432507 coding downstream 412671 2405363 ~ 2422641 (-)
LOC103036044 LOC108432506 coding downstream 439947 2376247 ~ 2395365 (-)
LOC103037376 NA coding downstream 462357 2324606 ~ 2372955 (-)
LOC103032964 LOC108444491,LOC107722586,LOC107718136,LOC107693739,LOC107589867 coding upstream 24433 2916789 ~ 2928066 (-)
LOC103034573 pla2g4a,LOC107718137,LOC107677770,LOC107693742,LOC107722605,LOC107589895,LOC107594671 coding upstream 93977 2986333 ~ 3036834 (-)
c1h1orf27 cunh1orf27,LOC103031066 coding upstream 207490 3099846 ~ 3114769 (-)
LOC111193343 prg4 coding upstream 271355 3163711 ~ 3179594 (-)
LOC103033918 LOC108431152,LOC106599103,LOC106568909,LOC108278312 coding upstream 296651 3189007 ~ 3217021 (-)
G881 mblac1 non-coding downstream 1468 2832123 ~ 2833844 (-)
G854 NA non-coding downstream 55430 2779649 ~ 2779882 (-)
G850 NA non-coding downstream 87032 2748048 ~ 2748280 (-)
G825 NA non-coding downstream 185325 2616083 ~ 2649987 (-)
G838 NA non-coding downstream 186299 2645262 ~ 2649013 (-)
G952 NA non-coding upstream 103474 2995830 ~ 3000663 (-)
G958 NA non-coding upstream 157052 3049408 ~ 3049755 (-)
G963 NA non-coding upstream 168587 3060943 ~ 3061199 (-)
G977 pdc,pdca,LOC108277616,LOC107693745,LOC107594646 non-coding upstream 200589 3092945 ~ 3149212 (-)
G990 NA non-coding upstream 295147 3187503 ~ 3187982 (-)
G807 NA other downstream 234801 2550216 ~ 2600511 (-)
znf414 NA other downstream 400911 2423713 ~ 2434401 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 907057 1920480 ~ 1928255 (-)
yipf1 yipf1 other downstream 962185 1864515 ~ 1873127 (-)
LOC111197534 NA other downstream 1979152 855579 ~ 856160 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other upstream 18398 2910754 ~ 2970340 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other upstream 501848 3394204 ~ 3445386 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 990014 3882370 ~ 3909671 (-)
G1308 NA other upstream 1207409 4099765 ~ 4101566 (-)
LOC111193794 LOC108442858 other upstream 1374645 4267001 ~ 4271970 (-)

Expression


Co-expression Network