G1353


Basic Information

Item Value
gene id G1353
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 4275838 ~ 4276794 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU1838
ttaCGATCAGAccttactccaactcccataattcacctgcacccactattagacctcactacaactcctataattcacctgcacccactatcagccctcactacaactcccataattcacctgtacttactcactcactacgactcccataattcacctgtacccactattagacctcactacaactcctataattcacctgcacccactatcagccctcactttaactctcataattcacctgcacccactat

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1838 True 254 lncRNA 0.46 4 4275838 4276794

Neighbor

gene id symbol gene type direction distance location
LOC111193765 NA coding downstream 38393 4220875 ~ 4237445 (-)
LOC103027148 NA coding downstream 54922 4214015 ~ 4220916 (-)
dnhd1 NA coding downstream 68315 4149693 ~ 4207523 (-)
med29 med29 coding downstream 148612 4122118 ~ 4127226 (-)
LOC111193716 NA coding downstream 223055 4052487 ~ 4052783 (-)
LOC103028190 LOC103028190 coding upstream 58054 4334848 ~ 4338794 (-)
LOC111192761 NA coding upstream 110453 4387247 ~ 4388980 (-)
LOC111192762 NA coding upstream 115152 4391946 ~ 4393659 (-)
LOC107197778 NA coding upstream 458244 4735038 ~ 4747924 (-)
irs1 irs1,LOC107577679 coding upstream 628947 4905741 ~ 4943017 (-)
G1324 NA non-coding downstream 113965 4161479 ~ 4161873 (-)
G1323 NA non-coding downstream 118998 4156601 ~ 4156840 (-)
G1301 NA non-coding downstream 194055 4079537 ~ 4081783 (-)
G1290 NA non-coding downstream 265958 4006162 ~ 4009880 (-)
G1267 NA non-coding downstream 394107 3879564 ~ 3881731 (-)
G1363 NA non-coding upstream 78079 4354873 ~ 4355132 (-)
G1374 NA non-coding upstream 103804 4380598 ~ 4381126 (-)
G1385 NA non-coding upstream 369987 4646781 ~ 4655868 (-)
G1399 NA non-coding upstream 406440 4683234 ~ 4683540 (-)
G1414 NA non-coding upstream 428793 4705587 ~ 4705946 (-)
LOC111193794 LOC108442858 other downstream 3868 4267001 ~ 4271970 (-)
G1308 NA other downstream 174272 4099765 ~ 4101566 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other downstream 366167 3882370 ~ 3909671 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other downstream 830452 3394204 ~ 3445386 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other downstream 1305498 2910754 ~ 2970340 (-)
LOC111193783 LOC108442858 other upstream 115 4276909 ~ 4321340 (-)
LOC103031123 LOC108411357 other upstream 1426912 5703706 ~ 5721108 (-)
nlk nlk2,nlk,LOC107682651,LOC107666197,LOC106581270 other upstream 4677083 8953877 ~ 9092112 (-)
LOC103037880 LOC108432996 other upstream 4836685 9113479 ~ 9133571 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other upstream 5469828 9746622 ~ 9755755 (-)

Expression


Co-expression Network