G1399


Basic Information

Item Value
gene id G1399
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 4683234 ~ 4683540 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU1899
tactgtacacaacacaagccttatgatcaccatgacctttatcaccaacaagctctacaatacagagttactatattcactaataccacttacaactttactgtacacaacacaagccttatgttcaccatgacctttatcaccaacaagctctacaatacagagacAAAAAGAACCAAAAGCCAGAATCTGTAATGGTATCACTTCTGGGACTCAGcgttaatgcagaaaagtataTTAACTTTGTTCACGTTAATATTTCCAGAcacatttctgcatttttaaGAAGACAATGCAGAACCACATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1899 True 307 lncRNA 0.50 1 4683234 4683540

Neighbor

gene id symbol gene type direction distance location
LOC111192762 NA coding downstream 289575 4391946 ~ 4393659 (-)
LOC111192761 NA coding downstream 294254 4387247 ~ 4388980 (-)
LOC103028190 LOC103028190 coding downstream 344440 4334848 ~ 4338794 (-)
LOC111193765 NA coding downstream 445789 4220875 ~ 4237445 (-)
LOC103027148 NA coding downstream 462318 4214015 ~ 4220916 (-)
LOC107197778 NA coding upstream 51498 4735038 ~ 4747924 (-)
irs1 irs1,LOC107577679 coding upstream 222201 4905741 ~ 4943017 (-)
LOC103027032 NA coding upstream 290006 4973546 ~ 5101897 (-)
fbxo46 fbxo46,si:dkey-114g7.4,LOC107672409,LOC107561382 coding upstream 639073 5322613 ~ 5331630 (-)
LOC103027738 si:ch211-11n16.2,LOC108442869,LOC108278225,LOC107678255,LOC107749652,LOC107561380,LOC105909327,LOC107758522 coding upstream 785694 5469234 ~ 5489576 (-)
G1385 NA non-coding downstream 27366 4646781 ~ 4655868 (-)
G1374 NA non-coding downstream 302108 4380598 ~ 4381126 (-)
G1363 NA non-coding downstream 328102 4354873 ~ 4355132 (-)
G1353 NA non-coding downstream 406440 4275838 ~ 4276794 (-)
G1324 NA non-coding downstream 521361 4161479 ~ 4161873 (-)
G1414 NA non-coding upstream 22047 4705587 ~ 4705946 (-)
G1421 NA non-coding upstream 33593 4717133 ~ 4717442 (-)
G1425 NA non-coding upstream 50097 4733637 ~ 4733883 (-)
G1444 NA non-coding upstream 72387 4755927 ~ 4756539 (-)
G1567 NA non-coding upstream 156348 4839888 ~ 4863645 (-)
LOC111193783 LOC108442858 other downstream 361894 4276909 ~ 4321340 (-)
LOC111193794 LOC108442858 other downstream 411264 4267001 ~ 4271970 (-)
G1308 NA other downstream 581668 4099765 ~ 4101566 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other downstream 773563 3882370 ~ 3909671 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other downstream 1237848 3394204 ~ 3445386 (-)
LOC103031123 LOC108411357 other upstream 1020166 5703706 ~ 5721108 (-)
nlk nlk2,nlk,LOC107682651,LOC107666197,LOC106581270 other upstream 4270337 8953877 ~ 9092112 (-)
LOC103037880 LOC108432996 other upstream 4429939 9113479 ~ 9133571 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other upstream 5063082 9746622 ~ 9755755 (-)
rap1gap2 rap1gap2 other upstream 5563925 10247465 ~ 10461860 (-)

Expression


Co-expression Network