G2162


Basic Information

Item Value
gene id G2162
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 7811117 ~ 7811613 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU2878
aaaaaaaaaaaaaaaaaaaaaaagagatctcaaaagaaacaaaggctcacaaaaaagagagatcttaaaagaagccacaaaagagagagaaaagatctCCAGTTTATTTTTGAACTTTTGGTTTTCAAGAAGTCTTTCCTAAGTTTCTTAAAGTTTGATTTCATTTCCTTTGTTTGAGCCATGCCATGTAGCAGCAGATCCTTTGTTTGATTTTCCCGCCCTTTTTCTTCACTGCCACATTTAAGGCCCTCATCCAAAGCCACTGCACACACCCTCCGTAGTGCAGTGGTAGCACACCCGTCTGGAGTTCCAAAGGTTGGGAGTTCAAATCCCGGTTCAAGCACTTCATCACAGATACACCAAACCAACtgcacacactatatatatcaaatataatattaccaataaataataaataagcaaaaaaataaaaaataaattaacaaataaaataactctGCATTTGAGTCCACCTCCCCCCACTAAACCGTAACAAA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2878 True 497 lncRNA 0.40 1 7811117 7811613

Neighbor

gene id symbol gene type direction distance location
dhx16 dhx16,LOC107704755 coding downstream 630184 7165536 ~ 7180933 (-)
rnf225 NA coding downstream 668207 7137056 ~ 7142910 (-)
LOC103038529 LOC108432985 coding downstream 677506 7123071 ~ 7133611 (-)
LOC103037673 LOC108432984 coding downstream 698868 7104292 ~ 7112249 (-)
LOC103038203 gabbr1a,gabbr1,LOC108432983,LOC107683297,LOC107586826,LOC108277950,LOC107704758 coding downstream 709723 7023176 ~ 7101394 (-)
LOC103025735 robo2,LOC107741616 coding upstream 18230 7829843 ~ 8482228 (-)
LOC103024281 NA coding upstream 889584 8701197 ~ 8722610 (-)
LOC103023547 LOC108432992,LOC103353587,LOC100691215,LOC108277929,LOC102314497 coding upstream 914718 8726331 ~ 8787049 (-)
mrps23 NA coding upstream 1045713 8857326 ~ 8862790 (-)
LOC103026958 nos2,LOC108432969 coding upstream 1055708 8867321 ~ 8890459 (-)
G2152 NA non-coding downstream 30446 7779385 ~ 7780671 (-)
G2133 NA non-coding downstream 255958 7538002 ~ 7555159 (-)
G2103 NA non-coding downstream 496492 7314424 ~ 7314625 (-)
G2098 NA non-coding downstream 536904 7273712 ~ 7274213 (-)
G2093 NA non-coding downstream 564395 7245790 ~ 7246722 (-)
G2192 NA non-coding upstream 6092 7817705 ~ 7822446 (-)
G2195 NA non-coding upstream 15595 7827208 ~ 7840545 (-)
G2203 NA non-coding upstream 107512 7919125 ~ 7946217 (-)
G2212 NA non-coding upstream 201216 8012829 ~ 8013671 (-)
G2232 NA non-coding upstream 292073 8103686 ~ 8143457 (-)
LOC103031123 LOC108411357 other downstream 2090009 5703706 ~ 5721108 (-)
LOC111193783 LOC108442858 other downstream 3489777 4276909 ~ 4321340 (-)
LOC111193794 LOC108442858 other downstream 3539147 4267001 ~ 4271970 (-)
G1308 NA other downstream 3709551 4099765 ~ 4101566 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other downstream 3901446 3882370 ~ 3909671 (-)
nlk nlk2,nlk,LOC107682651,LOC107666197,LOC106581270 other upstream 1142264 8953877 ~ 9092112 (-)
LOC103037880 LOC108432996 other upstream 1301866 9113479 ~ 9133571 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other upstream 1935009 9746622 ~ 9755755 (-)
rap1gap2 rap1gap2 other upstream 2435852 10247465 ~ 10461860 (-)
G2783 NA other upstream 2770676 10582289 ~ 10582747 (-)

Expression


Co-expression Network