G2098


Basic Information

Item Value
gene id G2098
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 7273712 ~ 7274213 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU2809
tctgtggattgtccttgactgttctcaccattcttcttctctgcctttctgatatttttcttggcctgccacttctgggcttaacaagaactgtccctgtgctcttccatttccttactatgttcctcacagtggaaactgacaggttgaatctctgagacaactttttgtatccttcccctgaacaactatgttgaacaatctttgtttttagatcatttgagagttgttttgatgagcccatgatgccactcttcagaggagattcaaataggagaacaacttgcaattggccaccttaaataccttttctcatgattggatacacctggctatgaagttcaaagctcaatgaggttaccaaaccaattttgtgcttcagtaagtcagtaaaaagtagttaggagtattcaaatcaataaaatgaaaagggtgcccatacttttgcaccggtcaaattttggtttaatgcatattgcacattttctgttagtacaataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2809 True 502 lncRNA 0.38 1 7273712 7274213

Neighbor

gene id symbol gene type direction distance location
dhx16 dhx16,LOC107704755 coding downstream 92779 7165536 ~ 7180933 (-)
rnf225 NA coding downstream 130802 7137056 ~ 7142910 (-)
LOC103038529 LOC108432985 coding downstream 140101 7123071 ~ 7133611 (-)
LOC103037673 LOC108432984 coding downstream 161463 7104292 ~ 7112249 (-)
LOC103038203 gabbr1a,gabbr1,LOC108432983,LOC107683297,LOC107586826,LOC108277950,LOC107704758 coding downstream 172318 7023176 ~ 7101394 (-)
LOC103025735 robo2,LOC107741616 coding upstream 555630 7829843 ~ 8482228 (-)
LOC103024281 NA coding upstream 1426984 8701197 ~ 8722610 (-)
LOC103023547 LOC108432992,LOC103353587,LOC100691215,LOC108277929,LOC102314497 coding upstream 1452118 8726331 ~ 8787049 (-)
mrps23 NA coding upstream 1583113 8857326 ~ 8862790 (-)
LOC103026958 nos2,LOC108432969 coding upstream 1593108 8867321 ~ 8890459 (-)
G2093 NA non-coding downstream 26990 7245790 ~ 7246722 (-)
G2088 NA non-coding downstream 52631 7208911 ~ 7221081 (-)
G2082 NA non-coding downstream 71151 7193533 ~ 7202561 (-)
G2075 NA non-coding downstream 85199 7181692 ~ 7188513 (-)
G2056 NA non-coding downstream 315277 6947109 ~ 6958435 (-)
G2103 NA non-coding upstream 40211 7314424 ~ 7314625 (-)
G2133 NA non-coding upstream 263789 7538002 ~ 7555159 (-)
G2152 NA non-coding upstream 505172 7779385 ~ 7780671 (-)
G2162 NA non-coding upstream 536904 7811117 ~ 7811613 (-)
G2192 NA non-coding upstream 543492 7817705 ~ 7822446 (-)
LOC103031123 LOC108411357 other downstream 1552604 5703706 ~ 5721108 (-)
LOC111193783 LOC108442858 other downstream 2952372 4276909 ~ 4321340 (-)
LOC111193794 LOC108442858 other downstream 3001742 4267001 ~ 4271970 (-)
G1308 NA other downstream 3172146 4099765 ~ 4101566 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other downstream 3364041 3882370 ~ 3909671 (-)
nlk nlk2,nlk,LOC107682651,LOC107666197,LOC106581270 other upstream 1679664 8953877 ~ 9092112 (-)
LOC103037880 LOC108432996 other upstream 1839266 9113479 ~ 9133571 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other upstream 2472409 9746622 ~ 9755755 (-)
rap1gap2 rap1gap2 other upstream 2973252 10247465 ~ 10461860 (-)
G2783 NA other upstream 3308076 10582289 ~ 10582747 (-)

Expression


Co-expression Network