G2056


Basic Information

Item Value
gene id G2056
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 6947109 ~ 6958435 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU2743
tctctaagtgtcctgtaggagtctCCAAAGCCAAGTTTTtagaatataaattatataataagttATTTTGCTGCAGAGAAAAGGGGTTTTATATCACCTATATTGTAACCTGTATACGGGTCAaggtataaaaaaatacatttctactAACTTCCTTTCTTAGAACTAAATACAAATGAATATTATGTAAATGACagattattataacattttctgTGATTTCCAAAGGTCATCTGGAGTTGCACTTTGAATTGTTTTGCACGTCACCAGTAGTATAactaccacagtttgagaaacactgatctgaGATACACTGAGATACACTATAGCGTCATTTTATACCATTTTTGTGAAATAGCATATGAATATTTTactactaaataaaaagaactCAAAGAAACTGACCAAAAAGCATAATTCTGAAGAAGGTTTCCTCCGGGTGGATCTTCAGAATTAGCATACACGAGTCACAGTCAATCCATTTGCCATCAAATGCCATTCCAATattgtCGCCCTCCTCCATAATAGGATCCATAGATGCATCAACCTTGTAAGTCCAGGACATGGTAAGACACTGGTCTCCTTTTAGCATGGTTGCAGTCATTTCCAAAGACCCATCTGCAGTTTTCTTCAGTTCTGCCATAGAGTTATCTATTCCCTGATACCCCTGAATGTCATCGGTATCCCATGATGCAACGCCAACAAAATACCACTTTCCTAAATACTTGTCATTGGTTAGGAGAGCTGTGCTGGACAGAGGAGCCGGAGGAAGTGATGGCACCAGCAGCTGAAGCACAGCATAAAGAATTGTCAAAACATCCCCAATCATGACTGCAGCTCAGAGAGACAGACGGACGTCCAGCCACTGACAGAACCTCAGAGCGCTTCAGCTTTATATGAATTGCTTAAAGGGTCATTCACCTTGTCTGATGTTGCACAGAAGCTGTCTAGGCTGTTAATAATTGctg
>TU2744
gatgAATATACATATGTTTTAATTTACTGTTAACATCTGTATAATCATACTTTACATGTAATATCTtgtcaaattactgttttttgggGGCTATTTAAAAATCCTTATTTAATTAAGATACTTACTTTAGCATGGTTGCAGTCATTTCCAAAGACCCATCTGCAGTTTTCTTCAGTTCTGCCATAGAGTTATCTATTCCCTGATACCCCTGAATGTCATCGGTATCCCATGATGCAACGCCAACAAAATACCACTTTCCTAAATACTTGTCATTGGTTAGGAGAGCTGTGCTGGACAGAGGAGCCGGAGGAAGTGATGGCACCAGCAGCTGAAGCACAGCATAAAGAATTGTCAAAACATCCCCAATCATGACTGCAGCTCAGAGAGACAGACGGACGTCCAGCCACTGACAGAACCTCAGAGCGCTTCAGCTTTATATGAATTGCTTAAAGGGTCATTCACCTTGTCTGATGTTGCACAGAAGCTGTCTAGGCTGTTAATAATTGctg
>TU2745
TGGGGGGGTTGACAGAGGTCGGAGTCCAGTACTGCagccaaatcagatttgtttttcAGATCTGTTTTTCTGACTGTTCACACTGCAGATTTGCATGTCTGAACATCACAAACATCACAATCTGCATGGCTTCCACTGGTAGTTTCAGTAAATAACCTTTGACAATTTTCTTGGAACCACGCACTTTAGTCTTTTAGGATTTAATTATGTCAAATGAGGTTTGTTGTGTTTCGAGTGACGCAAAAGACACCTTGATCTACGATTAGAGCGACCAGAGCTTCCAGACTGAGACGCATCTGAATAAATCTGTATAAATCTAATAATGCAGTCACATTTCAGACCACCTCTAAGTGTGGTTTTTACAGAGTTGTCAaattagaaaatgtaaatactCTAATGCTAGCTAATGCTCTAAACGTAGATAATGCTACGGCTACATCTAGCTCCCGACCCTCCACTGCGGGCAGCCCTACTCGGGACATGCCGGGGTCCCCAGAGAGGCCTGCTTCACCTAgcgttagcatcatggctaacctGATTGATGCCCCGACCTGGTTCCTTCCCGTGctggaaaatctgaaaagttctTTTGGAAAGTGAACTTTCGGGAGCTTTAAATTCTTCCAAGATTACAGCGCGGATATCTCCCGCCGACGGGCTTTCTCACGCAAAGTGAAAGCCGCGCTGCACAAGGAGGGGATTCGGTTCAGCCTGCTGTACCCTGCTAAGGACGGTTTCAGGTTGTTTGATTCCCCGGAGGCTGCACATGCTTTTCTAAAAAACTACATCAGTCACTGGGCTACTTTTGAAGTCTCCTGAGGAGAGCTGTGCTGGACAGAGGAGCCGGAGGAAGTGATGGCACCAGCAGCTGAAGCACAGCATAAAGAATTGTCAAAACATCCCCAATCATGACTGCAGCTCAGAGAGACAGACGGACGTCCAGCCACTGACAGAACCTCAGAGCGCTTCAGCTTTATATGAATTGCTTAAAGGGTCATTCACCTTGTCTGATGTTGCACAGAAGCTGTCTAGGCTGTTAATAATTGctg
>TU2747
aaaatatggggttacatacatgaagtagtatatttaaatgttacttaagtatatttgaaatagttccattttagtacagttagcCCAATTTATGTAGGACttttgtataataaatacaaacacgtttgcactctttaaatatactgtttaataatgtggctacaagttcactttagtgcactatagcataaaaATGACTAGTATAAttaaatctacttttttcaccagggtagtTACTGTTGAGCCACCATGTAGCTAGTTCAGTTGTAGTCACCCTTCTGGGGGTTTCACTGCTAAGACATAGACAGTTTCACAGTAAGCCTTAATTAAACAGCTCTTCCTTTAAGAACTATGCTGCCTTGTGTGAATTCTTCCTCTTCCATCACGAGGGTGGACTAATGAGGTCAGGCAATATTACCATTTTGTAGCCATTTAGAGAGAAAACTATTCTTAGTACTTAGAACAGAAAAAGTGTTCATGTGAAGAATATTCTAGGCAAGTTATTTCCCAACACAAGAATGAAGGTtcttttgagatgctaagtatGGTTTTATTAACTATATTAACTATATTAAATGATAGTACTGCAGAGTACAATGATAAAATCCAGCTTTCAAGTCACTTACCATAGCTAACCAGCTTACCTAAGGGTAGCACAGGAGGTTATACAAGCCTCACGGCACAACATTATAAACAATTGCTATTTGTATCAGGTGTACTAAGATTTGTCAACTCTATTAAccgtttctttctttgttttcaaATGTAGAACCAGGTACACATTTAGTAACCAACACATTCTAGACTGTTAGAATGCATATTGGACAGCAAAGGTTGATGTCAGACAAGAACATGAAGacagaaaaatcagaaaatgaaTGCAATATTCAAAAACCGGCCTTATTCACCTCttaacccaaataaacccaACAAATAAGAGAGAGGGGCTGCTGAGAATGCTTGGAGCTCCCCAAGAGCTCCTAACTCCCTCATCCCAACTCAGCACAGCAAAACATTACTGgtaaatagtttaaatatttGACACTACAGTGCTGTTACCTGCTCAGAGAGGTTATTCCAGCTTGCAGAAATCTGAAAtgacatatatattttagtgtaaactggggtgcctcatagaaatgtagaaaaatggCATTAAAATGGAATAGAACTGTTACATTactattatacatatttaagaatttaaagaatttaaacaaGATCTGCTTTACAGCTCAAAAAACATTCAGACAGCTTCACTGAGCATAAAAGAACATGCAGATTATATTTTGACACACCTTTTGTCTGAGGAGGGATCACAAACTGATCAATGACCCAGTAACTTTCCATTTTCGTCTTAAATTTTTCCACCAGCTCTCCTCGCGCGTCTTGAGTACGTGCAAAAAGCATAATTCTGAAGAAGGTTTCCTCCGGGTGGATCTTCAGAATTAGCATACACGAGTCACAGTCAATCCATTTGCCATCAAATGCCATTCCAATattgtCGCCCTCCTCCATAATAGGATCCATAGATGCATCAACCTTGTAAGTCCAGGACATGGTAAGACACTGGTCTCCTTTTAGCATGGTTGCAGTCATTTCCAAAGACCCATCTGCAGTTTTCTTCAGTTCTGCCATAGAGTTATCTATTCCCTGATACCCCTGAATGTCATCGGTATCCCATGATGCAACGCCAACAAAATACCACTTTCCTAAATACTTGTCATTGGTTAGGAGAGCTGTGCTGGACAGAGGAGCCGGAGGAAGTGATGGCACCAGCAGCTGAAGCACAGCATAAAGAATTGTCAAAACATCCCCAATCATGACTGCAGCTCAGAGAGACAGACGGACGTCCAGCCACTGACAGAACCTCAGAGCGCTTCAGCTTTATATGAATTGCTTAAAGGGTCATTCACCTTGTCTGATGTTGCACAGAAGCTGTCTAGGCTGTTAATAATTGctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2743 False 968 lncRNA 0.36 4 6947109 6954569
TU2744 False 509 lncRNA 0.37 2 6947109 6949969
TU2745 False 1049 lncRNA 0.47 2 6947109 6953820
TU2747 True 1963 lncRNA 0.32 5 6947109 6958435

Neighbor

gene id symbol gene type direction distance location
LOC111192946 NA coding downstream 565251 6358247 ~ 6381858 (-)
LOC103031676 NA coding downstream 583209 6336086 ~ 6363900 (-)
LOC103031434 NA coding downstream 1282820 5657791 ~ 5664289 (-)
LOC103027738 si:ch211-11n16.2,LOC108442869,LOC108278225,LOC107678255,LOC107749652,LOC107561380,LOC105909327,LOC107758522 coding downstream 1457533 5469234 ~ 5489576 (-)
fbxo46 fbxo46,si:dkey-114g7.4,LOC107672409,LOC107561382 coding downstream 1615479 5322613 ~ 5331630 (-)
LOC103038203 gabbr1a,gabbr1,LOC108432983,LOC107683297,LOC107586826,LOC108277950,LOC107704758 coding upstream 64741 7023176 ~ 7101394 (-)
LOC103037673 LOC108432984 coding upstream 145857 7104292 ~ 7112249 (-)
LOC103038529 LOC108432985 coding upstream 164636 7123071 ~ 7133611 (-)
rnf225 NA coding upstream 178621 7137056 ~ 7142910 (-)
dhx16 dhx16,LOC107704755 coding upstream 207101 7165536 ~ 7180933 (-)
LOC111194390 NA non-coding downstream 43840 6892851 ~ 6903269 (-)
G1986 NA non-coding downstream 54376 6890172 ~ 6892733 (-)
G1978 NA non-coding downstream 76772 6869975 ~ 6870337 (-)
G1972 NA non-coding downstream 170216 6776677 ~ 6776893 (-)
G1971 NA non-coding downstream 180510 6766341 ~ 6766599 (-)
G2075 NA non-coding upstream 223257 7181692 ~ 7188513 (-)
G2082 NA non-coding upstream 235098 7193533 ~ 7202561 (-)
G2088 NA non-coding upstream 250476 7208911 ~ 7221081 (-)
G2093 NA non-coding upstream 287355 7245790 ~ 7246722 (-)
G2098 NA non-coding upstream 315277 7273712 ~ 7274213 (-)
LOC103031123 LOC108411357 other downstream 1226001 5703706 ~ 5721108 (-)
LOC111193783 LOC108442858 other downstream 2625769 4276909 ~ 4321340 (-)
LOC111193794 LOC108442858 other downstream 2675139 4267001 ~ 4271970 (-)
G1308 NA other downstream 2845543 4099765 ~ 4101566 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other downstream 3037438 3882370 ~ 3909671 (-)
nlk nlk2,nlk,LOC107682651,LOC107666197,LOC106581270 other upstream 1995442 8953877 ~ 9092112 (-)
LOC103037880 LOC108432996 other upstream 2155044 9113479 ~ 9133571 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other upstream 2788187 9746622 ~ 9755755 (-)
rap1gap2 rap1gap2 other upstream 3289030 10247465 ~ 10461860 (-)
G2783 NA other upstream 3623854 10582289 ~ 10582747 (-)

Expression


Co-expression Network