G2082


Basic Information

Item Value
gene id G2082
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 7193533 ~ 7202561 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU2789
CTTCCATCAACAGATTGTTTATTGTAATTAGGAATCTGTGCGTTCTccagaaaagaacaaaaagcattaaaataaaagtaacctCAACAAAGATCAAAGTAGAGGCAATGGTCCCTCAGGTTAGGAAAATGGAAACACAATGGTGTAGAGTTTTATGTAGTTTGGCAGTGTGCCtcgataaataaaacaaacacaacacatatACACCTTtacatacaaacaataaaacaaattaaaacacatataGAACAATACCCCATAGCCTCACAaaagtaaaaagataaaaaggcttttatgaaaaataagacaGAAACTTAAATATCTCCGTAAGACCCATTTATAGAACCTCAAAAATGGCACAACATTAACAGTAGTAAATTGAGATGATAtgaaaataagtttaataagGCCTGCAGTCCCATTTAAGCACACAgtacaaagaaaaatatagtcCCTGCATACCATATTTCTGTGTTTGATATAAATTCGTGGAAATAATTCTTGCCTGTTGGCTGGCATGCATGCTCCACTAGCTGAAAGTGCATtgagggaaaaaataagtaaagaaaacaaaggaaaacaacTAAATGAACACACTGATACTACAAGTAAAATTAGCAGCCATTTAGACAATAATATGATGGGATTTTTGGGAATTCAGGCTAAATTTACAGTGTCTGTCAAATTATGGCACAACcattatatacatatagtgCACATATCAGCATTTAACAGCCACTGCCCAGCACATCTCTACATCATTTAACTGTCTCCCTCCTACTCTTACAAAGTGTGTTTTAGTGCATCCCTGGGTTCAAGCTTACTGTAGATGTTTTGGTGTAGTTCTATTAGCATTCCATCCCTCTTCTCTGCATCCAAAAGGACTTCTCAATTATCTTGTCCCTTTTTTGCAAACTCTCCCTCAGTTTTTCCTCTTCCAAACGTCTCCGTGCCTGTTCAGCTTTCCAGGCTTGTTCTActtgcttgttttctttgctcatCTCTCTCAGCTCCTTGCGCACATCTCTCAGCTGCTCTGTCAGTTCAGCAATGGCTTGTTTGTGACTTTGTCTTTGgtcCTGTATAACGGTCTCTGCTTCTTTTAAAGCCATAGAGAGTTTGGAGACTTCCTTTCTCATGGTGGCTGTGTGTTGTTCCTGGTCTCTGAGGCAGGCTGCAAGCAGGGCCTCCTTCTCTTGCACCTGACTGGCCAAAGCAGTTTCAGCTCCTTCTCCTGGCAATCCTCTGCCAATCAGGGAATCTGAGAGGGCCTGCAGCAGTGCTCCCAGGGCAGAGTCCCGCTCTTTCCatacctccctctctttctggaCATCCTGTAGTGATTGCGTCTTCTCAGTTAACTCCACCCGCAGAtgctgaaattaataaaatacagtacaggccaaaaagtttggacacaccttctcattcaagtagttttct
>TU2791
tgaaaataaagaaaacatattgaatgagaagggtgtacaaacttttggcctgtactgtacatacatacatatgttGGAATATTACAAATTATGCAATATTAAAATCACAAATACGCTTTACTGTATGTAAAGAGGGGAAACAAGCTTTCAAATTCCAGTcatcacatatatatttttagccaTGGGTCAACCACCTGGTGTACTGGTAAACAGAGCAGCGAGACTGGGTGTGGGACTGGCTTTGAACCATGTCCTCGTTGTTTGCCTTACATTTATGACATCCTGGTTACACTGGAGCACAGTGTTGAGAGTGATCAggtctctgtccctctctctgccAGCCTGCCGGAGGGCCTCCAGCTCTTTCTGAAGCCCACATTCTCTCTCCTTCAGCTCAGACAGCTCAGCCTCCAAAACACCCTCACGGTCAGAGCTTGGAGATACGGTCACCTTACTGATGAACTTATCAGCACCCTCTTTCCCTGCCCCCAGCTCAGCACACAGCTTTCGGATCAAAGGAACACATTCCTGAATGACTTTCTCTCTGCTCTGCAATGATTGGCCGAGCTGGTGAATCAGTACATTCTTATCATCCAAGCTGTTGTGGAGATTCACTGAAAGTGAAGGCTCTGACTGACTGGCATTACTGTTGTCTGACTGGTTGCTGTCCCGAAGCCTTGCCTCCagggtcctgatgagagcctgCGCTTGATCCAACTGCTCCCGTAACTGCCTGACTGCAAGGTGCACTCTGCCTGTAGTGACCTCTCCACGCAGGGGCAAAAACTCATCCCTTAGTTCAGTCAGAACATCTTCACTCTCTCCATCCACTTCATTCACCTCCTGGTCACCTCCCTCCCCAAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2789 True 1443 lncRNA 0.46 4 7199111 7202561
TU2791 False 866 lncRNA 0.42 5 7193533 7197243

Neighbor

gene id symbol gene type direction distance location
dhx16 dhx16,LOC107704755 coding downstream 12600 7165536 ~ 7180933 (-)
rnf225 NA coding downstream 50623 7137056 ~ 7142910 (-)
LOC103038529 LOC108432985 coding downstream 59922 7123071 ~ 7133611 (-)
LOC103037673 LOC108432984 coding downstream 81284 7104292 ~ 7112249 (-)
LOC103038203 gabbr1a,gabbr1,LOC108432983,LOC107683297,LOC107586826,LOC108277950,LOC107704758 coding downstream 92139 7023176 ~ 7101394 (-)
LOC103025735 robo2,LOC107741616 coding upstream 627282 7829843 ~ 8482228 (-)
LOC103024281 NA coding upstream 1498636 8701197 ~ 8722610 (-)
LOC103023547 LOC108432992,LOC103353587,LOC100691215,LOC108277929,LOC102314497 coding upstream 1523770 8726331 ~ 8787049 (-)
mrps23 NA coding upstream 1654765 8857326 ~ 8862790 (-)
LOC103026958 nos2,LOC108432969 coding upstream 1664760 8867321 ~ 8890459 (-)
G2075 NA non-coding downstream 5020 7181692 ~ 7188513 (-)
G2056 NA non-coding downstream 235098 6947109 ~ 6958435 (-)
LOC111194390 NA non-coding downstream 290264 6892851 ~ 6903269 (-)
G1986 NA non-coding downstream 300800 6890172 ~ 6892733 (-)
G1978 NA non-coding downstream 323196 6869975 ~ 6870337 (-)
G2088 NA non-coding upstream 6350 7208911 ~ 7221081 (-)
G2093 NA non-coding upstream 43229 7245790 ~ 7246722 (-)
G2098 NA non-coding upstream 71151 7273712 ~ 7274213 (-)
G2103 NA non-coding upstream 111863 7314424 ~ 7314625 (-)
G2133 NA non-coding upstream 335441 7538002 ~ 7555159 (-)
LOC103031123 LOC108411357 other downstream 1472425 5703706 ~ 5721108 (-)
LOC111193783 LOC108442858 other downstream 2872193 4276909 ~ 4321340 (-)
LOC111193794 LOC108442858 other downstream 2921563 4267001 ~ 4271970 (-)
G1308 NA other downstream 3091967 4099765 ~ 4101566 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other downstream 3283862 3882370 ~ 3909671 (-)
nlk nlk2,nlk,LOC107682651,LOC107666197,LOC106581270 other upstream 1751316 8953877 ~ 9092112 (-)
LOC103037880 LOC108432996 other upstream 1910918 9113479 ~ 9133571 (-)
hspa13 hspa13,LOC107682527,LOC107666191,LOC107714176 other upstream 2544061 9746622 ~ 9755755 (-)
rap1gap2 rap1gap2 other upstream 3044904 10247465 ~ 10461860 (-)
G2783 NA other upstream 3379728 10582289 ~ 10582747 (-)

Expression


Co-expression Network