LOC103029949 (slc46a1)


Basic Information

Item Value
gene id LOC103029949
gene name slc46a1
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11258446 ~ 11279177 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU3788
TATATCAACCCTTTCTGGCTTGTTCTGACCACAAACCTGGCCACAGCCCTGTACGCTTACCTTTTTGTACCGGAGTCGGTCACTCCTGACCCTGAAACGAAGCTCGTCTCTACCCGGCATTACAGGGCTGTGTATGATCTCTATACATCTGGAGGGAAGAAAGGACACAGGGCCTGGCTGTGGCTCTACACGCTCTGCTTTTTCCTTGTGGTCACTGTACACTTTGGTTCCCGTGAGCTGTATGTTCTATATGAGCTGAGCACACCTCTGTGCTGGGACTCCGAGCTGATTGGCTACGGGTCAGCCGCTCAGCACCTGTCATACATTAGCAGCCTGCTGGGCTTAAAGGCTTTGCAGCAATGTCTGGAGGACTCCTGGGTGGCCATCATAGGCCTGGCTTCCAACGTTGCTGGCTTGGTGGTGTTTTCAGTGGCAGACACCACAGCTCTCATGTTCACAGGATATGGTCTGTCCTTTTTAATAATGGCATCCACCCCAGTCCTGAGATCCAAACTGTCCAAACTGGTGGATCCTTCAGAACAAGGTGCTCTGTTTGCCTCTGTGGCGTGTGTGGAGGGCCTCTGCTCGCTGGTGGCCAGTGGGCTCTTTAACTCTCTGTATCCTGCCACATTACATGTGATGAAGGGTTTCCCCTTCCTCTTCGGGGCTATTCTCCTCCTCATCCCTGCTGGAATTATCGGGGGCTTGAGGTGTCGGGAGCAGAGGATGAACAACAGGGAGACTGCAGTGAACTGAAACTGACTGTGCAAGATCTTCGGCACAAAAAGTGGAAAATGACACAGAGATGGTGTCTCAGATCCTGACCAGGGCAGATTTCAGTCGGTGATTTAGGATACAGCCGTGTATCTGTATGCTTCCGATCTTTTGAAACCAAAGCTCAAGAATGATTGGTATGATATGAAGGTGTGGAATGGGGTCATAAATATTGATgaagagcaaaaacaaaaagttttaGTGTAACAGTGACAATATACACAAATTGGTCATAAAACAATGTGAACAAATATTATGTCTGAATGCATTCGAATTACTAATCAGGGCcatttcccaaaagcatcttaagctctatctggatgggattagtttctcgtGGGGTCCTGAAGTCATTTTCTTTccctttgtgattttattcctgtccggaacgacAAGGTacctgtttttctcagacgtcctctaagcatattacaggctgaattatctactgttttttgctaaaCTCTGTGgtcatctctgagtttcatctccttgtgtttattaaaatagctgccacacacacaacgTAATTACACTTCGGGTGTGCGTTtccataaacacaacagcgagtggaaatggaggagctactgaaagcGAGAaggccaaaaaaactcacttgtccaactgttttttcaattgcagtccagatgcaagagttttatcacagaGTAGaagtatgaaatattttttacagatatcCCCCttagaaactaatcccatctgtaCAGGGTTTAAGCATGGAGAATGTCTTAACATGGAGAgagtgtgctcagtgtgaagctCGCTTGACCATCTAAGAATTATCTCTGTGCTAAGATGTTTTTCGGAAACCCAAACCAGATCAGTTTTACATGGAATTATACTCTCACACAGACAAGGAGGACTGAAGTGATcagtaaattagtttttttttaatgtagctttgttttatttatgtatttttaaatgtattttcttatgAACACAAAACAGAAGGGAGATTATTTGACCAAATAGattcttattgttatttttgataTTGGGAAATAACTAAATTGACTGCACTAATGTAATTAGAATGTTTTTAACGGTATTTCCACATTCACTCACTCAAACTTTTCCTCTTTTTAGAAAACcaaaatatggtcaccctacAGACATGCTATCTCGTTTTTCCACATTAGTTGGAACAACAGAAAATATTTAGTACAGTCATAATGATACCTAGACAGCAGGCGTTTAACACTGTGCCTGCATCTACTGCATCTGTGCAACAGTCAAAACAACAGACTGTTTATTAGCAGATATTTTAAAGTTAGTAATGAAAAAAGTGCTTTCTTCATCactgttatttcagtaatgtgtAATGAAGGATGatagaatatttaaataaatcatcatcagtctgtttttttttttaatattgtaactgatattataccctgaaatatcgttctatatcacccacccctaattatcacatcagggtactacttt
>XM_022671357.1
ATGGCGTCCCAAGAAGTCTTGCCTTTGCTCTGTGATTTCAGGTATATCAACCCTTTCTGGCTTGTTCTGACCACAAACCTGGCCACAGCCCTGTACGCTTACCTTTTTGTACCGGAGTCGGTCACTCCTGACCCTGAAACGAAGCTCGTCTCTACCCGGCATTACAGGGCTGTGTATGATCTCTATACATCTGGAGGGAAGAAAGGACACAGGGCCTGGCTGTGGCTCTACACGCTCTGCTTTTTCCTTGTGGTCACTGTACACTTTGGTTCCCGTGAGCTGTATGTTCTATATGAGCTGAGCACACCTCTGTGCTGGGACTCCGAGCTGATTGGCTACGGGTCAGCCGCTCAGCACCTGTCATACATTAGCAGCCTGCTGGGCTTAAAGGCTTTGCAGCAATGTCTGGAGGACTCCTGGGTGGCCATCATAGGCCTGGCTTCCAACGTTGCTGGCTTGGTGGTGTTTTCAGTGGCAGACACCACAGCTCTCATGTTCACAGGATATGGTCTGTCCTTTTTAATAATGGCATCCACCCCAGTCCTGAGATCCAAACTGTCCAAACTGGTGGATCCTTCAGAACAAGGTGCTCTGTTTGCCTCTGTGGCGTGTGTGGAGGGCCTCTGCTCGCTGGTGGCCAGTGGGCTCTTTAACTCTCTGTATCCTGCCACATTACATGTGATGAAGGGTTTCCCCTTCCTCTTCGGGGCTATTCTCCTCCTCATCCCTGCTGGAATTATCGGGGGCTTGAGGTGTCGGGAGCAGAGGATGAACAACAGGGAGACTGCAGTGAACTGAAACTGACTGTGCAAGATCTTCGGCACAAAAAGTGGAAAATGACACAGAGATGGTGTCTCAGATCCTGACCAGGGCAGATTTCAGTCGGTGATTTAGGATACAGCCGTGTATCTGTATGCTTCCGATCTTTTGAAACCAAAGCTCAAGAATGATTGGTATGATATGAAGGTGTGGAATGGGGTCATAAATATTGATgaagagcaaaaacaaaaagttttaGTGTAACAGTGACAATATACACAAATTGGTCATAAAACAATGTGAACAAATATTATGTCTGAATGCATTCGAATTACTAATCAGGGCcatttcccaaaagcatcttaagctctatctggatgggattagtttctcgtGGGGTCCTGAAGTCATTTTCTTTccctttgtgattttattcctgtccggaacgacAAGGTacctgtttttctcagacgtcctctaagcatattacaggctgaattatctactgttttttgctaaaCTCTGTGgtcatctctgagtttcatctccttgtgtttattaaaatagctgccacacacacaacgTAATTACACTTCGGGTGTGCGTTtccataaacacaacagcgagtggaaatggaggagctactgaaagcGAGAaggccaaaaaaactcacttgtccaactgttttttcaattgcagtccagatgcaagagttttatcacagaGTAGaagtatgaaatattttttacagatatcCCCCttagaaactaatcccatctgtaCAGGGTTTAAGCATGGAGAATGTCTTAACATGGAGAgagtgtgctcagtgtgaagctCGCTTGACCATCTAAGAATTATCTCTGTGCTAAGATGTTTTTCGGAAACCCAAACCAGATCAGTTTTACATGGAATTATACTCTCACACAGACAAGGAGGACTGAAGTGATcagtaaattagtttttttttaatgtagctttgttttatttatgtatttttaaatgtattttcttatgAACACAAAACAGAAGGGAGATTATTTGACCAAATAGattcttattgttatttttgataTTGGGAAATAACTAAATTGACTGCACTAATGTAATTAGAATGTTTTTAACGGTATTTCCACATTCACTCACTCAAACTTTTCCTCTTTTTAGAAAACcaaaatatggtcaccctacAGACATGCTATCTCGTTTTTCCACATTAGTTGGAACAACAGAAAATATTTAGTACAGTCATAATGATACCTAGACAGCAGGCGTTTAACACTGTGCCTGCATCTACTGCATCTGTGCAACAGTCAAAACAACAGACTGTTTATTAGCAGATATTTTAAAGTTAGTAATGAAAAAAGTGCTTTCTTCATCactgttatttcagtaatgtgtAATGAAGGATGatagaatatttaaataaatcatcatcagtctgtttttttttttaatattgtaactgatattataccctgaaatatcgttctatatcacccacccctaattatcacatcagggtactactttttttttttttttttgctg

Function

symbol description
slc46a1 Predicted to enable folic acid binding activity and transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in hereditary folate malabsorption. Orthologous to human SLC46A1 (solute carrier family 46 member 1).

NR:

description
PREDICTED: proton-coupled folate transporter

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005542 folic acid binding molecular_function

KEGG:

id description
K14613 SLC46A1; MFS transporter, PCFT/HCP family, solute carrier family 46 (folate transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU3788 False 2250 TUCP 0.34 4 11273998 11279159
XM_022671357.1 True 2310 mRNA 0.41 5 11258446 11279177

Neighbor

gene id symbol gene type direction distance location
unc119 unc119,LOC103043060,LOC107704800,LOC107548572,LOC107713212 coding upstream 141779 11092157 ~ 11116667 (+)
LOC103042748 LOC103042748,LOC108426910,LOC105898201,LOC104922853 coding upstream 168759 11085455 ~ 11089687 (+)
LOC103043417 NA coding upstream 759085 10486486 ~ 10499361 (+)
LOC103043114 NA coding upstream 1018626 10226770 ~ 10239820 (+)
LOC103042389 LOC108444298 coding upstream 1066102 10174281 ~ 10192344 (+)
ankmy2 ankmy2,ankmy2a,LOC107582236,LOC107586949,LOC107704763,LOC107683262,LOC107730870 coding downstream 17392 11296569 ~ 11303882 (+)
sostdc1 sostdc1 coding downstream 35795 11314972 ~ 11319136 (+)
ispd ispd coding downstream 41186 11320363 ~ 11364325 (+)
agmo agmo coding downstream 152786 11431963 ~ 11495096 (+)
etv1 etv1,LOC107683220,LOC107730861 coding downstream 226194 11505371 ~ 11610772 (+)
G2896 NA non-coding upstream 96816 11161415 ~ 11161630 (+)
G2860 NA non-coding upstream 187502 11070035 ~ 11070944 (+)
G2856 NA non-coding upstream 260347 10997768 ~ 10998099 (+)
G2854 NA non-coding upstream 263637 10994593 ~ 10994809 (+)
G2844 NA non-coding upstream 366326 10837441 ~ 10892120 (+)
G2907 NA non-coding downstream 2079 11281256 ~ 11281961 (+)
G2918 NA non-coding downstream 33204 11312381 ~ 11312608 (+)
G2970 NA non-coding downstream 245468 11524645 ~ 11536611 (+)
G2969 NA non-coding downstream 295774 11574951 ~ 11612299 (+)
G2979 NA non-coding downstream 347421 11626598 ~ 11627779 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 1514955 9634093 ~ 9743491 (+)
G2509 NA other upstream 1588321 9631865 ~ 9670125 (+)
lyrm9 lyrm9,LOC102789908 other upstream 2301054 8944461 ~ 8957392 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 2523494 8732723 ~ 8734952 (+)
G2304 NA other upstream 2697968 8560066 ~ 8560478 (+)
G2910 sarm1,LOC107756984 other downstream 8954 11288131 ~ 11288846 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other downstream 126366 11405543 ~ 11424451 (+)
G3096 NA other downstream 645273 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 1703448 12982625 ~ 12984269 (+)
LOC103035587 NA other downstream 2938630 14217807 ~ 14244380 (+)

Expression


Co-expression Network