G3096


Basic Information

Item Value
gene id G3096
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11924450 ~ 11927250 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU4041
TCTCCTGAGCACTCTGTTCTGATAAAACAGCACAACCAGAAGCACTAAGGCCAGGAAGAGCACATATCCCAGAACCAGGAGAGACACTGGATAGATGGAGGGAACAGCTGGTGGAGGAGTTTGTGGAAGTATGATTCTTCTTGTCTGTGGTTGAGaatctaaaaaacaaatatacaaaatgtatAGACAATTTATACATGAACACAGTCCTTTTATTGGATGTGAATAATTTTGTGATGAATATTATGGAAGATGACATATGAAATGTCTAtaaacacagaatgatctaGACAGACTGGTGCAAAGCACATACAGACTCTCACTATTGTTACTTTCTATCCTTCCcaaaaacattacaattatTAAATGATGGAAACCAAATGTGTGTGACCAACATTATGATCAACAATAGTTACCGAAGTTGCTATCAAGCCTGTTTACAATGGAGAAAAGTGGTCCCTGACCTTGCAAGACAAAATGTCCCATCTGtcctcttttattatttaaaggcaAAGTATGATACAGGAAGCCTAGTGAGTGagcataaaataacaatgtgaTGTAAGTATTTTTCTcaagcatgtgtaaagtttCTGTAACAGTTAGGAGGCAAATATATTCAGTTGTGTCTGTTCCTCTGACCTCCACAAGTGACTCCAGCACTGTGGGAGCAGTCAGTGTGGTTCTTCAGGGAATGAGGACAGTCCCACAGGTGAATCTCATTCCCTCTACACTTCACTCTGTTCATCCAGATAGTTCCTCCACCAGAACCATCAGCAGCTCTTCTATTAGCACTCAGCGCCGGCCCACAACCCAGCTGCCTGCAGATCACCTGAGCATCCCTGATGTCCCAGAGGTCACCACATACAGACCCCCATGTTTTATTATGATACACCTGCAGCCATCCAGAACAGCTTCCTACTCCTCCCCTCAGCCTCAGAGGAATGTGCTCTATTGAGCACGGTCTCTCATGAGGAGATGAATCACACAGCCAATTTGTCAAATCTAGTGTATTTCCATTCTCTGTGGTAGGAcaaaaaatcaaatattatgAAATTCCAATTACAAACTACATTAGTTCTAGCATTCTTTAAAGTCTTTAACACCTCATCATATCTGCCTACCTGAGCAGGTAATGCAAGCAACCTCATTGCGATTATCACACCTGTTCTCCCCCCAGGAAGAAGATGGACAGTGCCACAGAGTGGAGTCATGTTTCCTACATTTTACATTATCCAGCCAGTTAGGAGCTGATTCCACTCTTGCTTTAGACCAAGACTCACTGCCAGTTCTTCCACAGTTCAGCTCTCGACAGATCAATTTTGCCGTTTCATCAGTCAtcccatttacacacacattcccCCAGGTTCCATTATAGTACACCTCCAGATTCCCCTCACAGCCCTCAGTCAGTCTGATCTCTTTATACTCTGGCGGGAgaaagatagctagctagttatgCACATTGATTTAAACGTGCAAAAGTTTCTTctttaattattcaaaatgTACCTCCAGTTGTACATAGATAGGGCATTGGTACTTGATTACAAGATCATTACAAACTGAGCAATTCAAGATACGAAGTACCTGAGCACACGACTCCTACATCATCCTTGTGTCCACATTCATCCTCTCCACACAGCTGATATCTGCAGTTCCACAGAGACGCCTCGTTcccctcacactccacctcATTCAGCCAAATGGGTCCAGTTCCAGATCCAAACCGGGCTGGTACTGGTACTGGAGCACTGAGGGCGACTCCACACTGCAGCTGTCTGCA
>TU4042
TCTCCTGAGCACTCTGTTCTGATAAAACAGCACAACCAGAAGCACTAAGGCCAGGAAGAGCACATATCCCAGAACCAGGAGAGACACTGGATAGATGGAGGGAACAGCTGGTGGAGGAGTTTGTGGAAGTATGATTCTTCTTGTCTGTGGTTGAGaatcCCACAAGTGACTCCAGCACTGTGGGAGCAGTCAGTGTGGTTCTTCAGGGAATGAGGACAGTCCCACAGGTGAATCTCATTCCCTCTACACTTCACTCTGTTCATCCAGATAGTTCCTCCACCAGAACCATCAGCAGCTCTTCTATTAGCACTCAGCGCCGGCCCACAACCCAGCTGCCTGCAGATCACCTGAGCATCCCTGATGTCCCAGAGGTCACCACATACAGACCCCCATGTTTTATTATGATACACCTGCAGCCATCCAGAACAGCTTCCTACTCCTCCCCTCAGCCTCAGAGGAATGTGCTCTATTGAGCACGGTCTCTCATGAGGAGATGAATCACACAGCCAATTTGTCAAATCTAGTGTATTTCCATTCTCTGTGGTAGGAcaaaaaatcaaatattatgAAATTCCAATTACAAACTACATTAGTTCTAGCATTCTTTAAAGTCTTTAACACCTCATCATATCTGCCTACCTGAGCAGGTAATGCAAGCAACCTCATTGCGATTATCACACCTGTTCTCCCCCCAGGAAGAAGATGGACAGTGCCACAGAGTGGAGTCATGTTTCCTACATTTTACATTATCCAGCCAGTTAGGAGCTGATTCCACTCTTGCTTTAGACCAAGACTCACTGCCAGTTCTTCCACAGTTCAGCTCTCGACAGATCAATTTTGCCGTTTCATCAGTCAtcccatttacacacacattcccCCAGGTTCCATTATAGTACACCTCCAGATTCCCCTCACAGCCCTCAGTCAGTCTGATCTCTTTATACTCTGGCGGGAgaaagatagctagctagttatgCACATTGATTTAAACGTGCAAAAGTTTCTTctttaattattcaaaatgTACCTCCAGTTGTACATAGATAGGGCATTGGTACTTGATTACAAGATCATTACAAACTGAGCAATTCAAGATACGAAGTACCTGAGCACACGACTCCTACATCATCCTTGTGTCCACATTCATCCTCTCCACACAGCTGATATCTGCAGTTCCACAGAGACGCCTCGTTcccctcacactccacctcATTCAGCCAAATGGGTCCAGTTCCAGATCCAAACCGGGCTGGTACTGGTACTGGAGCACTGAGGGCGACTCCACACTGCAGCTGTCTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4041 True 1786 TUCP 0.45 2 11924450 11927250
TU4042 False 1301 lncRNA 0.35 3 11924450 11927250

Neighbor

gene id symbol gene type direction distance location
LOC103027225 NA coding upstream 13919 11884302 ~ 11910531 (+)
LOC103026933 LOC108426918 coding upstream 44380 11876926 ~ 11880070 (+)
LOC103031523 NA coding upstream 52109 11851902 ~ 11872341 (+)
LOC103031217 mag,LOC108427016,LOC108277883,LOC107752306,LOC107683144,LOC107587088,LOC107704773 coding upstream 80529 11810175 ~ 11843921 (+)
LOC103026019 lsr,LOC108427013 coding upstream 118852 11791031 ~ 11805598 (+)
LOC103046499 cadm2,cadm2b,LOC103046499,LOC108426969 coding downstream 360869 12288119 ~ 12602536 (+)
LOC103047626 LOC103047626,LOC108426971 coding downstream 696214 12623464 ~ 12638259 (+)
mipep mipep,LOC107724959,LOC106581117 coding downstream 713915 12641165 ~ 12668769 (+)
sacs sacs,LOC107670382,LOC107724954 coding downstream 780959 12708209 ~ 12753900 (+)
trappc4 trappc4,LOC107561742,LOC106612982 coding downstream 861651 12788901 ~ 12793303 (+)
G2983 NA non-coding upstream 170339 11731522 ~ 11754111 (+)
LOC111195845 arl4a,arl4aa non-coding upstream 213102 11698557 ~ 11711348 (+)
G2985 NA non-coding upstream 218018 11704873 ~ 11706432 (+)
LOC111192815 NA non-coding upstream 293619 11629286 ~ 11630831 (+)
G2979 NA non-coding upstream 296671 11626598 ~ 11627779 (+)
LOC111196183 NA non-coding downstream 30825 11958075 ~ 11958465 (+)
G3129 gbe1 non-coding downstream 179141 12106391 ~ 12109036 (+)
G3179 NA non-coding downstream 319727 12246977 ~ 12252612 (+)
G3205 NA non-coding downstream 649830 12577080 ~ 12658307 (+)
G3232 NA non-coding downstream 787368 12714618 ~ 12720840 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 499999 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 635604 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 645273 11258446 ~ 11279177 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 2180959 9634093 ~ 9743491 (+)
G2509 NA other upstream 2254325 9631865 ~ 9670125 (+)
G3313 sept5b,LOC108425237 other downstream 1055375 12982625 ~ 12984269 (+)
LOC103035587 NA other downstream 2290557 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 2517308 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 2913043 14840293 ~ 14845626 (+)
G3736 NA other downstream 3033923 14961173 ~ 14963583 (+)

Expression


Co-expression Network