G3621


Basic Information

Item Value
gene id G3621
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14362000 ~ 14363072 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU4821
tagggttgcagcggtaaccggtttcacggtataccgtggtattaaaatgcacggttatcataccgtgtgtgtttgcttattaccggtaaaacgcaagccagcggtgaaactcacccgcgcatgcgcaactctgctccgcttcagctactcagcacacagcggtgagaacggcagaaagtgcTAGACTAGAGCTtcattaacaattattattgttaatgaaaacgaaccaaataacgaaaactgaaagtgaaacttaactaactaatttataagcgctgttttcactcccgcagttctacagcgggaggtgttgtgctgattctgtccgcgaagcgggagtcggattgagcagggagtcggattcggcacaacagcggcagcgcggcagcacctcgcggtccgcggtgttagttgtaagcgctcgcgctagccgcaaaatacgacagaaaacactgagaaactgcagaattatgtattggactaaaatgagcacgaggagataaaagagaacctttacctgtgagtagctcacatcagaacacgcaaatctctctctctctgtgtctctctctctgtgtctctctctcgcacgtgaacttctccgcactgtgtttagctgttcttaaaaatcattttaattaaataatagttctatgcttctatgttagtgttaattaacataattctgatcatatttcgctcattcaaacagcctgaaaacagacttgtaatcttgtaatcaacaagcttgtaatcaatgtggccgtaaagtcacagctaaaggaggaaatacatcaaacctgttctcccatcttcgaaaacaccaccccgctgtgcagcggaaagtatgtgttcagtttataattttaatctgaacataaataaaaacctctttgtagtcgtgcacaacccatgcggtaagcgcccgcaaaagcgctgagttatccgaaatttgggcacgcaggtacaggcgtgaagtgcgtgctacgatggattcacgtgtccgtgtaaaggtcctggccggactggatgtgaaagacgccattcatttac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4821 True 1053 lncRNA 0.45 2 14362000 14363072

Neighbor

gene id symbol gene type direction distance location
git1 git1,LOC107685085,LOC107669736,LOC107548582,LOC105889552,LOC106580798 coding downstream 82710 14255315 ~ 14279290 (-)
LOC103035060 LOC108440363 coding downstream 193062 14138449 ~ 14168938 (-)
LOC103025751 LOC108427003,LOC107730853,LOC107582235,LOC107683286,LOC108277959 coding downstream 611721 13734473 ~ 13750279 (-)
LOC103043894 LOC108426997,LOC107589740 coding downstream 648625 13703983 ~ 13713375 (-)
myo1c myo1c,LOC107756890,LOC107743634 coding downstream 703076 13591095 ~ 13658924 (-)
blmh blmh,LOC107743628 coding upstream 51182 14414254 ~ 14435382 (-)
LOC103039849 cd3eap coding upstream 154863 14517935 ~ 14520858 (-)
LOC103040167 gpr4,LOC108278409,LOC107743733,LOC107669721,LOC107548551 coding upstream 177335 14540407 ~ 14577509 (-)
LOC103040481 eml2,LOC108277999,LOC107685092,LOC107669753 coding upstream 229953 14593025 ~ 14630713 (-)
LOC103041915 NA coding upstream 349246 14712318 ~ 14720394 (-)
LOC111190296 NA non-coding downstream 43103 14281032 ~ 14318897 (-)
G3610 NA non-coding downstream 114141 14247642 ~ 14247859 (-)
G3469 NA non-coding downstream 640975 13680519 ~ 13721025 (-)
G3474 NA non-coding downstream 670118 13689761 ~ 13691882 (-)
G3459 prpf8 non-coding downstream 687428 13674108 ~ 13674572 (-)
LOC107197060 NA non-coding upstream 6141 14369213 ~ 14371084 (-)
LOC111190767 NA non-coding upstream 74599 14437671 ~ 14513968 (-)
G3631 NA non-coding upstream 111013 14474085 ~ 14475176 (-)
G3668 NA non-coding upstream 170671 14533743 ~ 14790620 (-)
G3697 NA non-coding upstream 373758 14736830 ~ 14737158 (-)
G3612 NA other downstream 77775 14283623 ~ 14284225 (-)
LOC111189390 NA other downstream 228763 14124173 ~ 14133237 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other downstream 789628 13544500 ~ 13572372 (-)
LOC111197384 NA other downstream 1226359 13130212 ~ 13135641 (-)
sgcg sgcg other downstream 1580835 12759066 ~ 12781165 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other upstream 17683 14380755 ~ 14471752 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other upstream 1914933 16278005 ~ 16282632 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other upstream 2281420 16644492 ~ 16653968 (-)
LOC103040336 mpzl2 other upstream 3620813 17983885 ~ 17998749 (-)
G4621 NA other upstream 3667290 18030362 ~ 18040766 (-)

Expression


Co-expression Network