G750


Basic Information

Item Value
gene id G750
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 2398073 ~ 2400426 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU983
aagctgcatgagtgggggttcgaacctgcgacctcccgctcatagtggcagcgcattagaccgctggaccactcggcgccccaaacagtgtttttaataaactatctgtgcactttcaaactTCTCattgcctcgttttaaatatcagggctcttgaaattctaccaatgaagcgtggagctactttaagcttatTAAAGATGTAGAAGTTGTCATTTCTTTGCATTGGTaccactatgcccctatcactagcattgtaaaccTGTTGAGAGCATCGGCTGGGAATGCTAGGGGAGGGTAGAGATGGTCTAttcgacaaaagtttgtacttgttatcatgtttcactatatactatatacaccccaagtccattttacagcggagttctcctttaaccttCCTAATAAACATTGGGAAGTTTGTCATTTTGCAGATGCTAGGTTTTTGCACGACCCCAGAAATTAACATTACATAAAGAAACGGCTAAAACAAAAGTTCTTTACCGaacccctgtgtgtgtgtttgtgcagagTATGCTGAGAGAtgtgtattataataatatgtcATTCATTCTCCTGTGTTTCTGACCTACTGTATGTTCAGCGGTTTTATGTCCTGTTTATTTATACAACTTTGCACTTTGTTCGATCACTTCAGTGCTTTGTACTTGTTTAATAActatatttatgatttttttattaactggcaaaaatgtattgatttctgtcaatgtcaattttttgTCTAGGGGTGCaccgaatatttggcaaccagaaTAATTAGAAGTTGCTTTCTCTCTTTAGCCAAATAATTTATACCAAAGGATTCTCTTTCAGCAGCGAGGTCAGGCCCACACTGAGTGCGTTCACATGCATGTTCATAATCTGATCACTGTAGTTATCTAATTATTTGTCACATAAGCAGCATACTCCGATTGCTTAGATTAAGGTATGGTCAAATATGAAGTAAAGATTGAGGTTGGTTGTTGTTTCCATGATTTAAAAGCGAAACTAATGTGGGTTAGTCAGTAGCTTAATCTATTGAACACAGCTGGTCTGCATgaatactgctgaacatgttccagtctggttatattctactgtcagcaactagtaGGAGAAGGCCCCCTCAAGgaggattctgataacagtgttgtaTGATCATACTGAGCCTCGAATGTGAAGTTTGGGTTTTACATTATGTTTACGTCCAGTCTTATTCTGTGAGATTATTGGCTGATTacaaagcaaaaatctgattactgtCTGAGTTTTCCCATTATCTGATTACTCAAGTTCCTGTAATTTTATTACTTACTAACTCAGATTCAACTGTAAACTGtctttttcgcactataaggtgcatcagAATATAAGGCgtattatgcaacactagtaaggaacaggggtgtcgccatgttttccttctaatttagcagatcTCGCTGTGGGGGGAGGgtggtaactaagttaagtaaagctaagctaagtaaacaaaactgtaattcttttttacaaaattatttaaagtcaaatgagcgctggatgttaatctacacagatttctctctcgAAAACTGTGAGTacagcgcttccatttatttagagtaagcttaggtttccagatttccactaaggctaggtgcagcagcattggcattagcagctaaccgctagcactaACCTGAATGGCAACATTCATAAGGCGCGCTGGATTGTAAGGGgcactggcgatttttgggaaaattaaagaattaagtGCACCTTGATAAAGAAGTAAGTGCGAAAAATAAAGTACCTAATtttacattagctagctaatgtcTATTTCCTGTATcagacattttaaattaaaggcCCTCTGCAGAGTTTTGTAATTgctgtgtttaaaatgatttatacattatttttacattgtacttttgtaacaaaaatatatttaagttatgCAAGGGTGAAAATAAGTGTattaattttgtttggttttattttgttcGGTGCATCCCTAGTCCAATGATGTTATCAAACACGTCTTCTGCCACCttgaagtattattattattattattattattattattattattattattattattattattattattaatatcatcaGTGcagttgtatgtgtgtgtacatgttgaCTGTAAGGACTgtagctttttttaaagcagatcTTAATGCTTGACATGTTCTTTCTCTGTTGTTGTCAGTTGTCCATCAGTTCTTTGGatattaaaatgtactgtaaaaaacGCAGAGTAAACACTGCGTCcaaaggtgtgtgtgagggcattgatgatgatgatggtgatgatgatgataatgtaaTGCAAACTCAGTGTTggt

Function

GO: NA

KEGG:

id description
ko04726 Serotonergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
TU983 True 2354 lncRNA 0.37 1 2398073 2400426

Neighbor

gene id symbol gene type direction distance location
LOC103036044 LOC108432506 coding downstream 2708 2376247 ~ 2395365 (-)
LOC103037376 NA coding downstream 25118 2324606 ~ 2372955 (-)
LOC103036651 LOC103036651,LOC108432502,LOC105899541,LOC105028795,LOC108278136,LOC107718120 coding downstream 285914 2103470 ~ 2112159 (-)
thap4 thap4 coding downstream 324430 2067978 ~ 2073643 (-)
LOC103039280 stk25b,LOC108432500,LOC107585675,LOC107722570,LOC108278137,LOC107693719,LOC107589848 coding downstream 345930 2038886 ~ 2052143 (-)
LOC103037050 LOC108432507 coding upstream 4937 2405363 ~ 2422641 (-)
LOC111193163 NA coding upstream 139390 2539816 ~ 2542341 (-)
LOC103035527 prrx1,prrx1a,LOC108444493,LOC107693734,LOC107722649 coding upstream 299932 2700358 ~ 2718035 (-)
fam129a NA coding upstream 434886 2835312 ~ 2892356 (-)
LOC103032964 LOC108444491,LOC107722586,LOC107718136,LOC107693739,LOC107589867 coding upstream 516363 2916789 ~ 2928066 (-)
G696 NA non-coding downstream 145494 2250881 ~ 2252579 (-)
G694 NA non-coding downstream 151267 2239442 ~ 2246806 (-)
G671 NA non-coding downstream 171512 2145428 ~ 2226561 (-)
G684 NA non-coding downstream 204562 2186107 ~ 2193511 (-)
G655 NA non-coding downstream 296498 2096220 ~ 2101575 (-)
G748 NA non-coding upstream 229 2400655 ~ 2403317 (-)
G780 NA non-coding upstream 80959 2481385 ~ 2487165 (-)
G782 LOC108432509 non-coding upstream 91189 2491615 ~ 2493843 (-)
G806 LOC108432510 non-coding upstream 122891 2523317 ~ 2526196 (-)
G810 csnk1g2 non-coding upstream 198420 2598846 ~ 2601377 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other downstream 469818 1920480 ~ 1928255 (-)
yipf1 yipf1 other downstream 524946 1864515 ~ 1873127 (-)
LOC111197534 NA other downstream 1541913 855579 ~ 856160 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other downstream 1727358 589669 ~ 670715 (-)
znf414 NA other upstream 23287 2423713 ~ 2434401 (-)
G807 NA other upstream 149790 2550216 ~ 2600511 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other upstream 510328 2910754 ~ 2970340 (-)
LOC103029371 agl,LOC108441576,LOC107722579 other upstream 993778 3394204 ~ 3445386 (-)
wdfy1 wdfy1,LOC106613124,LOC102785143,LOC103370589 other upstream 1481944 3882370 ~ 3909671 (-)

Expression


Co-expression Network