git1 (git1,LOC107685085,LOC107669736,LOC107548582,LOC105889552,LOC106580798)


Basic Information

Item Value
gene id git1
gene name git1,LOC107685085,LOC107669736,LOC107548582,LOC105889552,LOC106580798
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14255315 ~ 14279290 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236812.3
ATGCAGCCTGCCACAGCCTACAAATGTGTGTGGGGTGCAGGATGTAAATAAAACGTTGTTTCCGTGTCTTTTCCCTCCGCTTGCCTCTGGATATGGGGCTTGGATAGAACAGGCTAATAACCTACATAAATGTGGGATAGAGGAAAATCCCCAAATTATATTCTATACAGCCTATGAGAGTGATTTAACTCTCATTCAAACGGGAAAAGggagtgtttgtgtggttttaacGAAGCGTAAACTCCTTGCTGTGGGAGCAGAGGGAGGACACGGAGGAAAAAAAGACAGGAGCGAGAAGAAGGGTGAGGACCGGGAGCCCTGGAAAGCTCTTCGCCGGCTTCCGGACATTCAGGGGCGGCATCAAGGCTGCAGACGTCGCTAAACTGGAGCGTCGAACATCCCCGATACTGGATTGGAATATTTAAATTATCTCGTAAAGCCTCGCCGTATATTTGGCGTTTATCATGTCCAGAAAAGTCCAAAGGAGCGAGGTGTGTGCCGACTGCAGTGCGCCAGATCCGGGATGGAGCAGTATAAACAGGGGCGTGCTGATCTGTGATGAGTGCTGTTCTGTGCATCGAAGCTTGGGACGCCACATCTCCATCGTCAAGCATCTGCGCCACAGCGGCTGGCCCCCTTCCTTACTACAGATGGTCCAGACTCTAGCCAGTAATGGTGCTAACTCCATTTGGGAGCACTCCCTACTGGACCCTGCGCAGGTTCAGAGTGGTCGCAGGAAACCTAATCCACAAGATAAAGTGCACCCCACCAAGTCTGAGTTTATTCGTGCAAAGTATCAGATGCTTGCCTTCGTTCACAAGCTGCCCTGCCGTGATGATGATGGGGTCACCACCAAGGACCTCAGCAAGCAACTGCATTCGAGTGTGCGAACTGGGAGTCTGGAGACATGTCTGCGTCTGTTGTCTCTCGGTGCTCAGGCCAACTTCTTTCACCCCGAAAAAGGCACTACCCCTCTGCATGTGGCCGCTAAGGCAGGACAGGTCCTgcaggctgaactgcttgtagtATATGGAGCTGACCCTGGAGCACCAGACATCAACGGCCGCACACCCATGGATTATGCAAGGCAAGCAGGACAGGTGGAGTTAGCTGAGCGCCTGGTGGAATGTCAGTACGAGCTTACAGACAGACTGGCCTTCTACCTGTGTGGCCGACGCCCAGATCACAAGAATGGACATTATATCATCCCTCAAATGGCTGACAGAGCTCGCCCTAAGTGCCCAACGCAGAGCCTGGACCTGTCTGAACTGGCCAAGGCCGCCAAGAAGAAGCTGCAAGCGCTCAATAACCGTTTGTTCGAGGAGCTGGCCATGGACGTGTACGATGAGGTGGACCGCAGGGAGAATGATGCAGTTTGGCTAACAACTCAGAACCACAGCACTCTTGTTACCGAAAGGAGTGCAGTCCCCTTTTTGCCAGTCAACCCTGAATACTCAGCTACACGCAAccagGGTCGACAGAAGTTGGCTCGTTTTAATGCACGAGAGTTTGCCACCCTCATCATCGACATCCTCAGTGACGCCAAACGAAGGCAGCAAGGCAAAGGACTGACGAGTCCCACTGAGCCTCTGGATGTGGGCCAGGCGGACGATGACCAACATGACTATGACAGCGTAGCTTCTGACGAGGACACAGACAGTGAGCTGACCACACAGAACAACACTAACGCCCAGCGCAACAACCGTGCCAAGAGCATGGACTCGTCTGACCTGTCGGATGGACCCATCACACTGCAGGAGTATCTTGAAGTGAAGAAAGCCCTGGCTTCCTCAGAGGCCAAAGTCCAGCAGCTCATGAAGGTCAACAACAACCTGAGTGAAGAGCTTAGGAGGCTTCAGAAAGAGATCACGCGGATGCAGACGGAGAACATATCGCTGCGGGGGGCCCAGGCTGGGGCAACGGGAGCTTTATCTGGGGGCGGCGGTGTGCCTCTGTGGCCTAGCGGGGTGAGGGGTGTGGCGGGGGGAGGCGGAGGATCAGTCAGTGGGGATTCGGGCCTGGCCCCGCCCTCCTCAACCCCGCTCCGCAGGGACAGACAGGCCTTTTCTATGTACGAGCCTGGAGCCGCCGCCCCCAAAACCCTCGCCCCAGCGCTGGACTCCCTGACCGGCCACCTGCAGCCCCTCGGCCTCAGCATGCGAAAAGGGGGTCCTGCAGGGCCCACACCCTATGGAGGACCACACCTCTCAGCCTCTATGGAGGTGGGCCGATATATGgCTCCAAAGACAGAGAAACATGGAAGCGGCACGGATAGTGATTATGACAATACTCAAACGTATGACAGCTCACTTGGTGTGGGACGTAGCAGCGAAGATGACAGCCGAGGAGAGGTAGAGGAAAGCGGTGATGGTGGGGAGCCAGACCCCACCCTCCCTTGCACAGAAGATGTCATCTTGAAGACAGAGCAGGTCACCAAGAACATTCAGGAACTGCTGAGAGCGGCACAGGAGTTCAAACATGACAGTTTTGTGCCATGCTCAGAGAAGATCCATTTAGCTGTGACAGAGATGGCCTCTCTTTTTCCAAAGAGGCCGGCGCTGGACGCTGTTCGCTCTTCTCTGAGGCTGCTGGCAGCAAGCGCCTCTCGGCTACAGGTGGAGTGCCGCAAGGCAGCGCCCCCTGAACCATCAGCCAGCACAGTGGACTACCAGCTCCTCACCCAGCAGGTCATCCAGTGCGCTTATGACATTGCCAAGGCCGCCAAACAGCTGGTCACCATCACCACCCGCGAGAAGAAGCAGTGACCCAGTGGATGAGCAGGATGTGTACTTAATGAGAGACAGGCATGGGCACGCACTACAGAAACGGGACAGGAGTTGGCATACtggtggttaaaaaaaaaagaaaaaaaaaaa
>XM_007236813.3
ATGCAGCCTGCCACAGCCTACAAATGTGTGTGGGGTGCAGGATGTAAATAAAACGTTGTTTCCGTGTCTTTTCCCTCCGCTTGCCTCTGGATATGGGGCTTGGATAGAACAGGCTAATAACCTACATAAATGTGGGATAGAGGAAAATCCCCAAATTATATTCTATACAGCCTATGAGAGTGATTTAACTCTCATTCAAACGGGAAAAGggagtgtttgtgtggttttaacGAAGCGTAAACTCCTTGCTGTGGGAGCAGAGGGAGGACACGGAGGAAAAAAAGACAGGAGCGAGAAGAAGGGTGAGGACCGGGAGCCCTGGAAAGCTCTTCGCCGGCTTCCGGACATTCAGGGGCGGCATCAAGGCTGCAGACGTCGCTAAACTGGAGCGTCGAACATCCCCGATACTGGATTGGAATATTTAAATTATCTCGTAAAGCCTCGCCGTATATTTGGCGTTTATCATGTCCAGAAAAGTCCAAAGGAGCGAGGTGTGTGCCGACTGCAGTGCGCCAGATCCGGGATGGAGCAGTATAAACAGGGGCGTGCTGATCTGTGATGAGTGCTGTTCTGTGCATCGAAGCTTGGGACGCCACATCTCCATCGTCAAGCATCTGCGCCACAGCGGCTGGCCCCCTTCCTTACTACAGATGGTCCAGACTCTAGCCAGTAATGGTGCTAACTCCATTTGGGAGCACTCCCTACTGGACCCTGCGCAGGTTCAGAGTGGTCGCAGGAAACCTAATCCACAAGATAAAGTGCACCCCACCAAGTCTGAGTTTATTCGTGCAAAGTATCAGATGCTTGCCTTCGTTCACAAGCTGCCCTGCCGTGATGATGATGGGGTCACCACCAAGGACCTCAGCAAGCAACTGCATTCGAGTGTGCGAACTGGGAGTCTGGAGACATGTCTGCGTCTGTTGTCTCTCGGTGCTCAGGCCAACTTCTTTCACCCCGAAAAAGGCACTACCCCTCTGCATGTGGCCGCTAAGGCAGGACAGGTCCTgcaggctgaactgcttgtagtATATGGAGCTGACCCTGGAGCACCAGACATCAACGGCCGCACACCCATGGATTATGCAAGGCAAGCAGGACAGGTGGAGTTAGCTGAGCGCCTGGTGGAATGTCAGTACGAGCTTACAGACAGACTGGCCTTCTACCTGTGTGGCCGACGCCCAGATCACAAGAATGGACATTATATCATCCCTCAAATGGCTGACAGCCTGGACCTGTCTGAACTGGCCAAGGCCGCCAAGAAGAAGCTGCAAGCGCTCAATAACCGTTTGTTCGAGGAGCTGGCCATGGACGTGTACGATGAGGTGGACCGCAGGGAGAATGATGCAGTTTGGCTAACAACTCAGAACCACAGCACTCTTGTTACCGAAAGGAGTGCAGTCCCCTTTTTGCCAGTCAACCCTGAATACTCAGCTACACGCAAccagGGTCGACAGAAGTTGGCTCGTTTTAATGCACGAGAGTTTGCCACCCTCATCATCGACATCCTCAGTGACGCCAAACGAAGGCAGCAAGGCAAAGGACTGACGAGTCCCACTGAGCCTCTGGATGTGGGCCAGGCGGACGATGACCAACATGACTATGACAGCGTAGCTTCTGACGAGGACACAGACAGTGAGCTGACCACACAGAACAACACTAACGCCCAGCGCAACAACCGTGCCAAGAGCATGGACTCGTCTGACCTGTCGGATGGACCCATCACACTGCAGGAGTATCTTGAAGTGAAGAAAGCCCTGGCTTCCTCAGAGGCCAAAGTCCAGCAGCTCATGAAGGTCAACAACAACCTGAGTGAAGAGCTTAGGAGGCTTCAGAAAGAGATCACGCGGATGCAGACGGAGAACATATCGCTGCGGGGGGCCCAGGCTGGGGCAACGGGAGCTTTATCTGGGGGCGGCGGTGTGCCTCTGTGGCCTAGCGGGGTGAGGGGTGTGGCGGGGGGAGGCGGAGGATCAGTCAGTGGGGATTCGGGCCTGGCCCCGCCCTCCTCAACCCCGCTCCGCAGGGACAGACAGGCCTTTTCTATGTACGAGCCTGGAGCCGCCGCCCCCAAAACCCTCGCCCCAGCGCTGGACTCCCTGACCGGCCACCTGCAGCCCCTCGGCCTCAGCATGCGAAAAGGGGGTCCTGCAGGGCCCACACCCTATGGAGGACCACACCTCTCAGCCTCTATGGAGGTGGGCCGATATATGgCTCCAAAGACAGAGAAACATGGAAGCGGCACGGATAGTGATTATGACAATACTCAAACGTATGACAGCTCACTTGGTGTGGGACGTAGCAGCGAAGATGACAGCCGAGGAGAGGTAGAGGAAAGCGGTGATGGTGGGGAGCCAGACCCCACCCTCCCTTGCACAGAAGATGTCATCTTGAAGACAGAGCAGGTCACCAAGAACATTCAGGAACTGCTGAGAGCGGCACAGGAGTTCAAACATGACAGTTTTGTGCCATGCTCAGAGAAGATCCATTTAGCTGTGACAGAGATGGCCTCTCTTTTTCCAAAGAGGCCGGCGCTGGACGCTGTTCGCTCTTCTCTGAGGCTGCTGGCAGCAAGCGCCTCTCGGCTACAGGTGGAGTGCCGCAAGGCAGCGCCCCCTGAACCATCAGCCAGCACAGTGGACTACCAGCTCCTCACCCAGCAGGTCATCCAGTGCGCTTATGACATTGCCAAGGCCGCCAAACAGCTGGTCACCATCACCACCCGCGAGAAGAAGCAGTGACCCAGTGGATGAGCAGGATGTGTACTTAATGAGAGACAGGCATGGGCACGCACTACAGAAACGGGACAGGAGTTGGCATACtggtggttaaaaaaaaaagaaaaaaaaaaa
>XM_007236814.3
TGCAGCCTGCCACAGCCTACAAATGTGTGTGGGGTGCAGGATGTAAATAAAACGTTGTTTCCGTGTCTTTTCCCTCCGCTTGCCTCTGGATATGGGGCTTGGATAGAACAGGCTAATAACCTACATAAATGTGGGATAGAGGAAAATCCCCAAATTATATTCTATACAGCCTATGAGAGTGATTTAACTCTCATTCAAACGGGAAAAGggagtgtttgtgtggttttaacGAAGCGTAAACTCCTTGCTGTGGGAGCAGAGGGAGGACACGGAGGAAAAAAAGACAGGAGCGAGAAGAAGGGTGAGGACCGGGAGCCCTGGAAAGCTCTTCGCCGGCTTCCGGACATTCAGGGGCGGCATCAAGGCTGCAGACGTCGCTAAACTGGAGCGTCGAACATCCCCGATACTGGATTGGAATATTTAAATTATCTCGTAAAGCCTCGCCGTATATTTGGCGTTTATCATGTCCAGAAAAGTCCAAAGGAGCGAGGTGTGTGCCGACTGCAGTGCGCCAGATCCGGGATGGAGCAGTATAAACAGGGGCGTGCTGATCTGTGATGAGTGCTGTTCTGTGCATCGAAGCTTGGGACGCCACATCTCCATCGTCAAGCATCTGCGCCACAGCGGCTGGCCCCCTTCCTTACTACAGATGGTCCAGACTCTAGCCAGTAATGGTGCTAACTCCATTTGGGAGCACTCCCTACTGGACCCTGCGCAGGTTCAGAGTGGTCGCAGGAAACCTAATCCACAAGATAAAGTGCACCCCACCAAGTCTGAGTTTATTCGTGCAAAGTATCAGATGCTTGCCTTCGTTCACAAGCTGCCCTGCCGTGATGATGATGGGGTCACCACCAAGGACCTCAGCAAGCAACTGCATTCGAGTGTGCGAACTGGGAGTCTGGAGACATGTCTGCGTCTGTTGTCTCTCGGTGCTCAGGCCAACTTCTTTCACCCCGAAAAAGGCACTACCCCTCTGCATGTGGCCGCTAAGGCAGGACAGGTCCTgcaggctgaactgcttgtagtATATGGAGCTGACCCTGGAGCACCAGACATCAACGGCCGCACACCCATGGATTATGCAAGGCAAGCAGGACAGGTGGAGTTAGCTGAGCGCCTGGTGGAATGTCAGTACGAGCTTACAGACAGACTGGCCTTCTACCTGTGTGGCCGACGCCCAGATCACAAGAATGGACATTATATCATCCCTCAAATGGCTGACAGAGCTCGCCCTAAGTGCCCAACGCAGAGCCTGGACCTGTCTGAACTGGCCAAGGCCGCCAAGAAGAAGCTGCAAGCGCTCAATAACCGTTTGTTCGAGGAGCTGGCCATGGACGTGTACGATGAGGTGGACCGCAGGGAGAATGATGCAGTTTGGCTAACAACTCAGAACCACAGCACTCTTGTTACCGAAAGGAGTGCAGTCCCCTTTTTGCCAGTCAACCCTGAATACTCAGCTACACGCAAccagGGTCGACAGAAGTTGGCTCGTTTTAATGCACGAGAGTTTGCCACCCTCATCATCGACATCCTCAGTGACGCCAAACGAAGGCAGCAAGGCAAAGGACTGACGAGTCCCACTGAGCCTCTGGATGTGGGCCAGGCGGACGATGACCAACATGACTATGACAGCGTAGCTTCTGACGAGGACACAGACAGTGAGCTGACCACACAGAACAACACTAACGCCCAGCGCAACAACCGTGCCAAGAGCATGGACTCGTCTGACCTGTCGGATGGACCCATCACACTGCAGGAGTATCTTGAAGTGAAGAAAGCCCTGGCTTCCTCAGAGGCCAAAGTCCAGCAGCTCATGAAGGTCAACAACAACCTGAGTGAAGAGCTTAGGAGGCTTCAGAAAGAGATGCGAAAAGGGGGTCCTGCAGGGCCCACACCCTATGGAGGACCACACCTCTCAGCCTCTATGGAGGTGGGCCGATATATGgCTCCAAAGACAGAGAAACATGGAAGCGGCACGGATAGTGATTATGACAATACTCAAACGTATGACAGCTCACTTGGTGTGGGACGTAGCAGCGAAGATGACAGCCGAGGAGAGGTAGAGGAAAGCGGTGATGGTGGGGAGCCAGACCCCACCCTCCCTTGCACAGAAGATGTCATCTTGAAGACAGAGCAGGTCACCAAGAACATTCAGGAACTGCTGAGAGCGGCACAGGAGTTCAAACATGACAGTTTTGTGCCATGCTCAGAGAAGATCCATTTAGCTGTGACAGAGATGGCCTCTCTTTTTCCAAAGAGGCCGGCGCTGGACGCTGTTCGCTCTTCTCTGAGGCTGCTGGCAGCAAGCGCCTCTCGGCTACAGGTGGAGTGCCGCAAGGCAGCGCCCCCTGAACCATCAGCCAGCACAGTGGACTACCAGCTCCTCACCCAGCAGGTCATCCAGTGCGCTTATGACATTGCCAAGGCCGCCAAACAGCTGGTCACCATCACCACCCGCGAGAAGAAGCAGTGACCCAGTGGATGAGCAGGATGTGTACTTAATGAGAGACAGGCATGGGCACGCACTACAGAAACGGGACAGGAGTTGGCATACtggtggttaaaaaaaaaagaaaaaaaaaaa

Function

symbol description
git1 Predicted to enable GTPase activator activity and metal ion binding activity. Acts upstream of or within angiogenesis. Is expressed in head. Human ortholog(s) of this gene implicated in attention deficit hyperactivity disorder. Orthologous to human GIT1 (GIT ArfGAP 1).

NR:

description
PREDICTED: ARF GTPase-activating protein GIT1

GO: NA

KEGG:

id description
K05737 GIT1; G protein-coupled receptor kinase interactor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236812.3 True 2876 mRNA 0.55 21 14255315 14279290
XM_007236813.3 False 2849 mRNA 0.55 20 14255315 14279290
XM_007236814.3 False 2584 mRNA 0.53 20 14255315 14279289

Neighbor

gene id symbol gene type direction distance location
LOC103035060 LOC108440363 coding downstream 86377 14138449 ~ 14168938 (-)
LOC103025751 LOC108427003,LOC107730853,LOC107582235,LOC107683286,LOC108277959 coding downstream 505036 13734473 ~ 13750279 (-)
LOC103043894 LOC108426997,LOC107589740 coding downstream 541940 13703983 ~ 13713375 (-)
myo1c myo1c,LOC107756890,LOC107743634 coding downstream 596391 13591095 ~ 13658924 (-)
LOC103046123 NA coding downstream 673848 13574774 ~ 13581467 (-)
LOC103037230 ssh2,LOC108440358 coding upstream 52515 14331805 ~ 14364469 (-)
blmh blmh,LOC107743628 coding upstream 134964 14414254 ~ 14435382 (-)
LOC103039849 cd3eap coding upstream 238645 14517935 ~ 14520858 (-)
LOC103040167 gpr4,LOC108278409,LOC107743733,LOC107669721,LOC107548551 coding upstream 261117 14540407 ~ 14577509 (-)
LOC103040481 eml2,LOC108277999,LOC107685092,LOC107669753 coding upstream 313735 14593025 ~ 14630713 (-)
G3610 NA non-coding downstream 7456 14247642 ~ 14247859 (-)
G3469 NA non-coding downstream 534290 13680519 ~ 13721025 (-)
G3474 NA non-coding downstream 563433 13689761 ~ 13691882 (-)
G3459 prpf8 non-coding downstream 580743 13674108 ~ 13674572 (-)
LOC111197623 NA non-coding downstream 870368 13381254 ~ 13384947 (-)
LOC111190296 NA non-coding upstream 1742 14281032 ~ 14318897 (-)
G3621 NA non-coding upstream 82710 14362000 ~ 14363072 (-)
LOC107197060 NA non-coding upstream 89923 14369213 ~ 14371084 (-)
LOC111190767 NA non-coding upstream 158381 14437671 ~ 14513968 (-)
G3631 NA non-coding upstream 194795 14474085 ~ 14475176 (-)
LOC111189390 NA other downstream 122078 14124173 ~ 14133237 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other downstream 682943 13544500 ~ 13572372 (-)
LOC111197384 NA other downstream 1119674 13130212 ~ 13135641 (-)
sgcg sgcg other downstream 1474150 12759066 ~ 12781165 (-)
G3297 sacs,LOC107593479,LOC107740366,LOC107670382 other downstream 1496802 12740144 ~ 12758513 (-)
G3612 NA other upstream 4333 14283623 ~ 14284225 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other upstream 101465 14380755 ~ 14471752 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other upstream 1998715 16278005 ~ 16282632 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other upstream 2365202 16644492 ~ 16653968 (-)
LOC103040336 mpzl2 other upstream 3704595 17983885 ~ 17998749 (-)

Expression


Co-expression Network