RNA id: XM_007236813.3


Basic Information

Item Value
RNA id XM_007236813.3
length 2849
RNA type mRNA
GC content 0.55
exon number 20
gene id git1
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14255315 ~ 14279290 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGCAGCCTGCCACAGCCTACAAATGTGTGTGGGGTGCAGGATGTAAATAAAACGTTGTTTCCGTGTCTTTTCCCTCCGCTTGCCTCTGGATATGGGGCTTGGATAGAACAGGCTAATAACCTACATAAATGTGGGATAGAGGAAAATCCCCAAATTATATTCTATACAGCCTATGAGAGTGATTTAACTCTCATTCAAACGGGAAAAGggagtgtttgtgtggttttaacGAAGCGTAAACTCCTTGCTGTGGGAGCAGAGGGAGGACACGGAGGAAAAAAAGACAGGAGCGAGAAGAAGGGTGAGGACCGGGAGCCCTGGAAAGCTCTTCGCCGGCTTCCGGACATTCAGGGGCGGCATCAAGGCTGCAGACGTCGCTAAACTGGAGCGTCGAACATCCCCGATACTGGATTGGAATATTTAAATTATCTCGTAAAGCCTCGCCGTATATTTGGCGTTTATCATGTCCAGAAAAGTCCAAAGGAGCGAGGTGTGTGCCGACTGCAGTGCGCCAGATCCGGGATGGAGCAGTATAAACAGGGGCGTGCTGATCTGTGATGAGTGCTGTTCTGTGCATCGAAGCTTGGGACGCCACATCTCCATCGTCAAGCATCTGCGCCACAGCGGCTGGCCCCCTTCCTTACTACAGATGGTCCAGACTCTAGCCAGTAATGGTGCTAACTCCATTTGGGAGCACTCCCTACTGGACCCTGCGCAGGTTCAGAGTGGTCGCAGGAAACCTAATCCACAAGATAAAGTGCACCCCACCAAGTCTGAGTTTATTCGTGCAAAGTATCAGATGCTTGCCTTCGTTCACAAGCTGCCCTGCCGTGATGATGATGGGGTCACCACCAAGGACCTCAGCAAGCAACTGCATTCGAGTGTGCGAACTGGGAGTCTGGAGACATGTCTGCGTCTGTTGTCTCTCGGTGCTCAGGCCAACTTCTTTCACCCCGAAAAAGGCACTACCCCTCTGCATGTGGCCGCTAAGGCAGGACAGGTCCTgcaggctgaactgcttgtagtATATGGAGCTGACCCTGGAGCACCAGACATCAACGGCCGCACACCCATGGATTATGCAAGGCAAGCAGGACAGGTGGAGTTAGCTGAGCGCCTGGTGGAATGTCAGTACGAGCTTACAGACAGACTGGCCTTCTACCTGTGTGGCCGACGCCCAGATCACAAGAATGGACATTATATCATCCCTCAAATGGCTGACAGCCTGGACCTGTCTGAACTGGCCAAGGCCGCCAAGAAGAAGCTGCAAGCGCTCAATAACCGTTTGTTCGAGGAGCTGGCCATGGACGTGTACGATGAGGTGGACCGCAGGGAGAATGATGCAGTTTGGCTAACAACTCAGAACCACAGCACTCTTGTTACCGAAAGGAGTGCAGTCCCCTTTTTGCCAGTCAACCCTGAATACTCAGCTACACGCAAccagGGTCGACAGAAGTTGGCTCGTTTTAATGCACGAGAGTTTGCCACCCTCATCATCGACATCCTCAGTGACGCCAAACGAAGGCAGCAAGGCAAAGGACTGACGAGTCCCACTGAGCCTCTGGATGTGGGCCAGGCGGACGATGACCAACATGACTATGACAGCGTAGCTTCTGACGAGGACACAGACAGTGAGCTGACCACACAGAACAACACTAACGCCCAGCGCAACAACCGTGCCAAGAGCATGGACTCGTCTGACCTGTCGGATGGACCCATCACACTGCAGGAGTATCTTGAAGTGAAGAAAGCCCTGGCTTCCTCAGAGGCCAAAGTCCAGCAGCTCATGAAGGTCAACAACAACCTGAGTGAAGAGCTTAGGAGGCTTCAGAAAGAGATCACGCGGATGCAGACGGAGAACATATCGCTGCGGGGGGCCCAGGCTGGGGCAACGGGAGCTTTATCTGGGGGCGGCGGTGTGCCTCTGTGGCCTAGCGGGGTGAGGGGTGTGGCGGGGGGAGGCGGAGGATCAGTCAGTGGGGATTCGGGCCTGGCCCCGCCCTCCTCAACCCCGCTCCGCAGGGACAGACAGGCCTTTTCTATGTACGAGCCTGGAGCCGCCGCCCCCAAAACCCTCGCCCCAGCGCTGGACTCCCTGACCGGCCACCTGCAGCCCCTCGGCCTCAGCATGCGAAAAGGGGGTCCTGCAGGGCCCACACCCTATGGAGGACCACACCTCTCAGCCTCTATGGAGGTGGGCCGATATATGgCTCCAAAGACAGAGAAACATGGAAGCGGCACGGATAGTGATTATGACAATACTCAAACGTATGACAGCTCACTTGGTGTGGGACGTAGCAGCGAAGATGACAGCCGAGGAGAGGTAGAGGAAAGCGGTGATGGTGGGGAGCCAGACCCCACCCTCCCTTGCACAGAAGATGTCATCTTGAAGACAGAGCAGGTCACCAAGAACATTCAGGAACTGCTGAGAGCGGCACAGGAGTTCAAACATGACAGTTTTGTGCCATGCTCAGAGAAGATCCATTTAGCTGTGACAGAGATGGCCTCTCTTTTTCCAAAGAGGCCGGCGCTGGACGCTGTTCGCTCTTCTCTGAGGCTGCTGGCAGCAAGCGCCTCTCGGCTACAGGTGGAGTGCCGCAAGGCAGCGCCCCCTGAACCATCAGCCAGCACAGTGGACTACCAGCTCCTCACCCAGCAGGTCATCCAGTGCGCTTATGACATTGCCAAGGCCGCCAAACAGCTGGTCACCATCACCACCCGCGAGAAGAAGCAGTGACCCAGTGGATGAGCAGGATGTGTACTTAATGAGAGACAGGCATGGGCACGCACTACAGAAACGGGACAGGAGTTGGCATACtggtggttaaaaaaaaaagaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4803 lncRNA downstream 7456 14247642 ~ 14247859 (-) True G3610
TU4757 lncRNA downstream 122078 14124173 ~ 14133237 (-) False LOC111189390
TU4755 lncRNA downstream 122078 14128338 ~ 14133237 (-) False LOC111189390
TU4758 lncRNA downstream 123961 14128338 ~ 14131354 (-) False LOC111189390
TU4572 lncRNA downstream 534290 13680519 ~ 13721025 (-) True G3469
XR_002649055.1 lncRNA upstream 1742 14281032 ~ 14318897 (-) True LOC111190296
TU4821 lncRNA upstream 82710 14362000 ~ 14363072 (-) True G3621
TU4824 lncRNA upstream 89923 14369213 ~ 14371028 (-) False LOC107197060
TU4825 lncRNA upstream 89923 14369213 ~ 14371059 (-) True LOC107197060
XR_001518350.2 lncRNA upstream 89962 14369252 ~ 14371084 (-) False LOC107197060
XM_007236807.3 mRNA downstream 86377 14138449 ~ 14168938 (-) True LOC103035060
XM_022663131.1 mRNA downstream 122780 14127369 ~ 14132535 (-) False LOC111189390
XM_022663171.1 mRNA downstream 122780 14127369 ~ 14132535 (-) False LOC111189390
XM_022663105.1 mRNA downstream 122781 14127369 ~ 14132534 (-) True LOC111189390
XM_022663041.1 mRNA downstream 505036 13734473 ~ 13750279 (-) False LOC103025751
XM_007236816.3 mRNA upstream 52515 14331805 ~ 14364469 (-) False LOC103037230
XM_007236815.3 mRNA upstream 52515 14331805 ~ 14348694 (-) True LOC103037230
XM_022664148.1 mRNA upstream 52515 14331805 ~ 14348693 (-) False LOC103037230
XM_007236821.3 mRNA upstream 101927 14381217 ~ 14411427 (-) True slc6a4
XM_007236820.2 mRNA upstream 101927 14381217 ~ 14398759 (-) False slc6a4
XR_002648804.1 other downstream 122779 14124782 ~ 14132536 (-) False LOC111189390
XR_002648814.1 other downstream 122779 14125128 ~ 14132536 (-) False LOC111189390
XR_002648788.1 other downstream 122779 14127369 ~ 14132536 (-) False LOC111189390
XR_002648822.1 other downstream 122779 14127437 ~ 14132536 (-) False LOC111189390
TU4408 other downstream 1119674 13130212 ~ 13135641 (-) True LOC111197384
TU4805 other upstream 4333 14283623 ~ 14284225 (-) True G3612
trnae-uuc other upstream 755725 15035015 ~ 15035086 (-) True trnae-uuc
TU5685 other upstream 1998717 16278007 ~ 16282630 (-) False LOC103022652
XR_002649862.1 other upstream 2365262 16644552 ~ 16653968 (-) False ercc2
TU6059 other upstream 3704595 17983885 ~ 17998736 (-) True LOC103040336

Expression Profile