RNA id: XM_022663171.1


Basic Information

Item Value
RNA id XM_022663171.1
length 1839
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC111189390
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14124173 ~ 14133237 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cactaatgcagtttgctgtagttttgttataaaaatgtaatattattcaTGTGTCTGTTCATGTGTGATGTAGATTACATGCCTATTAGGttgagaggaggagaggaaatcTGTTCTGGGAGGTTGGAGGTGTATCATAATGCTGAGTGGGGGTCTATATGTGCTGATCTGTGGGACATCAGGGATGCTCAGGTGATCTGCAGGCAGCTGGGTTGTGGGCCGGCGCTGAGTGCTAATAGAAGAGCTGTTGATGGTTCTGGTGGAGGAACTATCTGGATGAACAGAGTGAAGTGTAGAGGGAATGAGATTCACCTGTGGGACTGTCCTCATTCCCTGAAGATCCACACTGGCTGCTCCCACAGTGCTGGAGTCACCTGTGCAGACATATTTGTCACATTACCTTTTTCATCTGAAACAACTACAACTTACACCACAGTACCagcacagctaacagagaaaaagacagtCCCTCCTTCAAAAAATCCATCATCTAATTTTCCATACATCTATCCAGTGTCTCTCCTGGTTCTGGGATCTGTGCTCTTCCTGGCCTTAGTGCTTCTGGTTGTGCTGTTTTATCAGAACAGAGTGCTCAGGAGAGgcGAGGAGGAAGACTCTGCTTGAGGCAGTCTATGAAGAGATTAACCATAAATGTGTCACTAACAGATATACTAAAAGAGaaAACTATGGCGAGGTCTATGATGATATCATACCTGCTGAAGAGAGCCCACACATTACAACAGGTTTGGATATTTTAATACGTACGATTTATTGTGGacacatggtaaacatgcaaaTTATATTTGCTTTTCACCTTAAtcaaaaatatatctatatatgtctGTGCAGCATACATTATTATGGTTTTCtatattatgataataaagtgtgattttttttttttttttcacacctaTAAAGAatgtgtcttcttttttttttttcatttttaaaagcacACTGAGCAACATGTTTCAGTTAATTAATGCATTTCATACTGttttagataaataaattaatcattacaGAGAGAATAAAGGTTTTCTCAACCACCCTTGTGGTCCCATGGGCTCACAAGTTCCTGGCAGCGCCAGAGTCGGCCCGTTTCTCATTATAGATTAAGCAAGTTTGGACTCTTGTACTTTGTCAGAACGAACTTGGTAAGTTCGGCTCACGAGTGCATACTCCAGAgaacaggacttttattttgtaattggaACTGCTGTGATCAGTAGAGTAGTAGGTGCATCCTTAGATGCATTTCCACAAACATACCCTACACCCGCCTCACAGGGCAGACAAACCGTCTTTGTTTGGTCCATCGCTCACCAGCCTTGCTGTAGTTCACAGGGAACCCACAATATTCCCACACTTAATCAGAGTTTCTGTAATCAGGATTAAAACTAGTTTTATATACTCTGTAAAAGCAtgagaaacacaaaaaagttGTTTGTATGTGTAGTTAAAAGAAACTGTGACTTATCTTCATGGTGGATGTTATGTGTTTGGATCTGCTGTCTGCAGGTGCAGCTTTAATgctgtattttgtgtgtttactcTCTCTGAAGTTTGTCTCCAGAAGGTAGCTGACTTTGTACCTTCCTTTGcccatagacacacacacagacacaaggaGGTGGAGCTGTGTTAATTAGTGCTGacgctttttaaaaatatggcgaaatgaaaaaaaagcttcttctgATTTGTCACTGAAAATGTTTGATAATTTCCTCTCCTCTTTCTAATAAGGTCATAGTGAGTGTGATTGGCGGCTGTggggaatctctctctctctctctctctctctctctctctctctctctctctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4572 lncRNA downstream 406344 13680519 ~ 13721025 (-) True G3469
TU4577 lncRNA downstream 435487 13689761 ~ 13691882 (-) True G3474
TU4557 lncRNA downstream 452797 13674108 ~ 13674572 (-) True G3459
TU4534 lncRNA downstream 554997 13544500 ~ 13572372 (-) False slc43a2
XR_002652513.1 lncRNA downstream 742422 13381254 ~ 13384947 (-) True LOC111197623
TU4803 lncRNA upstream 115107 14247642 ~ 14247859 (-) True G3610
XR_002649055.1 lncRNA upstream 148497 14281032 ~ 14318897 (-) True LOC111190296
TU4821 lncRNA upstream 229465 14362000 ~ 14363072 (-) True G3621
TU4824 lncRNA upstream 236678 14369213 ~ 14371028 (-) False LOC107197060
TU4825 lncRNA upstream 236678 14369213 ~ 14371059 (-) True LOC107197060
XM_022662993.1 mRNA downstream 377090 13734473 ~ 13750279 (-) False LOC103025751
XM_022663041.1 mRNA downstream 377090 13734473 ~ 13750279 (-) False LOC103025751
XM_022662931.1 mRNA downstream 377090 13734473 ~ 13750279 (-) True LOC103025751
XM_022662980.1 mRNA downstream 377091 13734473 ~ 13750278 (-) False LOC103025751
XM_007260880.3 mRNA downstream 413994 13703983 ~ 13713375 (-) True LOC103043894
XM_007236807.3 mRNA upstream 5914 14138449 ~ 14168938 (-) True LOC103035060
XM_007236813.3 mRNA upstream 122780 14255315 ~ 14279290 (-) False git1
XM_007236812.3 mRNA upstream 122780 14255315 ~ 14279290 (-) True git1
XM_007236814.3 mRNA upstream 122780 14255315 ~ 14279289 (-) False git1
XM_007236816.3 mRNA upstream 199270 14331805 ~ 14364469 (-) False LOC103037230
TU4408 other downstream 991728 13130212 ~ 13135641 (-) True LOC111197384
TU4317 other downstream 1368856 12740144 ~ 12758513 (-) True G3297
XR_002651739.1 other downstream 2833487 11281209 ~ 11293882 (-) False sarm1
TU3680 other downstream 3442904 10662422 ~ 10684465 (-) False LOC103025442
TU3640 other downstream 3544622 10582289 ~ 10582747 (-) True G2783
TU4805 other upstream 151088 14283623 ~ 14284225 (-) True G3612
trnae-uuc other upstream 902480 15035015 ~ 15035086 (-) True trnae-uuc
TU5685 other upstream 2145472 16278007 ~ 16282630 (-) False LOC103022652
XR_002649862.1 other upstream 2512017 16644552 ~ 16653968 (-) False ercc2
TU6059 other upstream 3851350 17983885 ~ 17998736 (-) True LOC103040336

Expression Profile