LOC103045337


Basic Information

Item Value
gene id LOC103045337
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 1783204 ~ 1792128 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245106.2
acgtaagtatgtaaagacgtgtgacgtggccagaagaagagaagaagcgacccaacaccccagtttttagaatgagtATATTATGCTTAGCAGGGATGTTGGTTCCAGCACACTGCtaccattaaacacagtttagagacaaaataatacggactgccacttaaaatgaataatagttATTGATTAAAGGGTCCCAGTATCTGTAGGTGCTTTCCTTGTGTTGTGTATCTGTGAGAAGTTCAGCAGAGGtggagatggtggaggtgggctggtctgttgGTTATTTCACACATTCCACTCTCCATTGTTTACATCAGGAAGGCCGTGCTGCTGTCAGGGCTACACTGGCACTGgagaggaaacacacacacacacacactgctaagCAATGGGATGGAAAAAGTGAGTATCTCAGAGCGAAGTGCTCTCTCTCATCCACAGCCCTTATCTTCTCTCAGACTGAAAGACCTGAGCAGATCTCAGTTCAGCTTCATTAGTGTAGATCTTCTGGATCTGATGCTGATCATCTCCCGTATTTGTTCTCGCTGTTCTCGCTCAGCCGTGCTATCTCTCCTGTGTTCGTAGTGTGGACTCCTGATCCCAGCTCACCTGGTCACCAGGGCAACCCTTAGATAAACCACAGGAGCCTTGATACCTTGGCAATGGAGCTGCGCCAGGAGACGGAAGCTCTGAGGTCCCATAAGGTCGCCTCCCACAGGAGAGCAATAAAAACACGAATCGTCTTTACACCTCTTTACACCGTCCTTATCGTCCTCTACCTGCTGTCTTCTTCAGAGGGACGAACACAGGGATGCGAGTGTCCCACAGCCACCGTTCTGGACCAGTTTCCCTCCAGTCTTCCCAGCAACACTTGCTGTCTGAACTTCACTGGATCTTCTTTATTTAACGTGTCTTGGACTGCTTTAGCTTCTTTGGAAAGCCTTGAGATTTTGGATCTTTCCTTGTGTAATCTGACTCATATTGATGATGAAACTGCAGCGGGTCTTGCTTTTCCTTCATTGCGAGAGCTGTACTTGAGTCAGAACCAGCTTAAATCAGTGCCTAGAACCTTTCTAGCTGATGCTGAGAGTTTGGAAGTGCTGGATTTGGGAAGGAATCTCCTGCAGGACCTTCCAGTAGACTTCCTGCTCAACTCGAGCTCAAGTCTTCGCGTCTTGCTTCTGGGTGGAAACAGACTTCAGTTTATTCCAAGTTCTGTCTTTAAGGATTCGCTCCAGCGGCTGGATTTGGCGGGAAACCTTTGGAACTGCACCTGTGCTTTGGTGGAGGAGCTCCAGCAGGTCCAGTTTGGCAACTCCACCATTGTAGAGGACACTGTGCGTAATCTGACCTGTGCTTCACCATTGAAACTGGCAGGAAGGGCAGTTTGGTCAATTCAGGCTAAAAACGTTTGTCCGCTAGAACCCACCAGTCTCAGTGCCCTGTTTATACTCCTCCCACTTTTTCTCCTCGTCATCCTGTTGCTCTGCTGGTGCTGCGGCAAAaaggagaacaaaaaaaaagactcctCAACCATCAGGTCCTGCAAGAAGGACACCCACCTGAGCAGAAATGGGCGCTGGGCTCAGGACAAGCTGCCGTTCGGAGAGAAAGCTGCAGCCGATAGTGCTAAAGACGCTATGCTAAAGAACCAGCTGATGCTCCGCCCGTCCTCAGCTCTGCTGGGCAGCACCAGGGACATCTACGAAGAAGTGGAGGTCAAACTCGGGTCCGTGGACTCTCTGGGGCCTCCACCCTCGACCTCGTCCGCAGATGGAGCGGTGGGAAAAGAGGAGCACaaggaaaaggaggaagaagacAGTAAGCAGGACCTGGAGACGGTCAGCGTGACCGAAGTGATGAAAGACTCAGCAGACCGAGAGAAGGCCTACATGACCCAGTCCACCAAATACTACAGCCTGGTTCCAGGACTGGAGATCGAGGATTCGGATCACGGAGAGTACGAGAGCGTGGACCTGTCCTGATGCTACGCTCTGTGTTTACATTACAAAACGTCTTATTACTAAGTTTTAATCTTTATGCCTttattgacatttaaaaaacttgTAAATTGTTTCACACTGGTTGATGAGCACAAAGAGAATTCCAGGTCAGGAAAGTCACTGACTGCTTGAAAAAACACTCCTGAAGAACCTAAAGAACTTTATCTTTCAGTGTATTTGaatgtaataatgttttaacccttgtgtggtgttcatatttttgttacttgtttactttgttactttgtatttaattcag
>XM_007245107.3
CTGTTGCTGTATATGGACACACCCGCCAAGCAGAGCAGCTTTACCCAACTTTACACAGGAGATTCACTTTAAAACATCATAttcctcatcttcatcatctttATCATCGTCAATATCATCATCAGCATTATCATCATGGGAGCTGGAGTGTGGACTCCTGATCCCAGCTCACCTGGTCACCAGGGCAACCCTTAGATAAACCACAGGAGCCTTGATACCTTGGCAATGGAGCTGCGCCAGGAGACGGAAGCTCTGAGGTCCCATAAGGTCGCCTCCCACAGGAGAGCAATAAAAACACGAATCGTCTTTACACCTCTTTACACCGTCCTTATCGTCCTCTACCTGCTGTCTTCTTCAGAGGGACGAACACAGGGATGCGAGTGTCCCACAGCCACCGTTCTGGACCAGTTTCCCTCCAGTCTTCCCAGCAACACTTGCTGTCTGAACTTCACTGGATCTTCTTTATTTAACGTGTCTTGGACTGCTTTAGCTTCTTTGGAAAGCCTTGAGATTTTGGATCTTTCCTTGTGTAATCTGACTCATATTGATGATGAAACTGCAGCGGGTCTTGCTTTTCCTTCATTGCGAGAGCTGTACTTGAGTCAGAACCAGCTTAAATCAGTGCCTAGAACCTTTCTAGCTGATGCTGAGAGTTTGGAAGTGCTGGATTTGGGAAGGAATCTCCTGCAGGACCTTCCAGTAGACTTCCTGCTCAACTCGAGCTCAAGTCTTCGCGTCTTGCTTCTGGGTGGAAACAGACTTCAGTTTATTCCAAGTTCTGTCTTTAAGGATTCGCTCCAGCGGCTGGATTTGGCGGGAAACCTTTGGAACTGCACCTGTGCTTTGGTGGAGGAGCTCCAGCAGGTCCAGTTTGGCAACTCCACCATTGTAGAGGACACTGTGCGTAATCTGACCTGTGCTTCACCATTGAAACTGGCAGGAAGGGCAGTTTGGTCAATTCAGGCTAAAAACGTTTGTCCGCTAGAACCCACCAGTCTCAGTGCCCTGTTTATACTCCTCCCACTTTTTCTCCTCGTCATCCTGTTGCTCTGCTGGTGCTGCGGCAAAaaggagaacaaaaaaaaagactcctCAACCATCAGGTCCTGCAAGAAGGACACCCACCTGAGCAGAAATGGGCGCTGGGCTCAGGACAAGCTGCCGTTCGGAGAGAAAGCTGCAGCCGATAGTGCTAAAGACGCTATGCTAAAGAACCAGCTGATGCTCCGCCCGTCCTCAGCTCTGCTGGGCAGCACCAGGGACATCTACGAAGAAGTGGAGGTCAAACTCGGGTCCGTGGACTCTCTGGGGCCTCCACCCTCGACCTCGTCCGCAGATGGAGCGGTGGGAAAAGAGGAGCACaaggaaaaggaggaagaagacAGTAAGCAGGACCTGGAGACGGTCAGCGTGACCGAAGTGATGAAAGACTCAGCAGACCGAGAGAAGGCCTACATGACCCAGTCCACCAAATACTACAGCCTGGTTCCAGGACTGGAGATCGAGGATTCGGATCACGGAGAGTACGAGAGCGTGGACCTGTCCTGATGCTACGCTCTGTGTTTACATTACAAAACGTCTTATTACTAAGTTTTAATCTTTATGCCTttattgacatttaaaaaacttgTAAATTGTTTCACACTGGTTGATGAGCACAAAGAGAATTCCAGGTCAGGAAAGTCACTGACTGCTTGAAAAAACACTCCTGAAGAACCTAAAGAACTTTATCTTTCAGTGTATTTGaatgtaataatgttttaacccttgtgtggtgttcatatttttgttacttgtttactttgttactttgtatttaattcag

Function

GO: NA

KEGG:

id description
ko04740 Olfactory transduction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245106.2 True 2262 mRNA 0.48 2 1783204 1785799
XM_007245107.3 False 1825 mRNA 0.48 3 1783204 1792128

Neighbor

gene id symbol gene type direction distance location
best4 best4,LOC106569841,LOC108262062 coding downstream 10313 1764264 ~ 1772891 (-)
acadm acadm,LOC107674066,LOC107602542,LOC107688505,LOC107584839 coding downstream 53818 1719812 ~ 1729386 (-)
rabggtb rabggtb,LOC107732517,LOC107584851,LOC107576861 coding downstream 65550 1707739 ~ 1717654 (-)
LOC111192362 NA coding downstream 286777 1493166 ~ 1496427 (-)
LOC103021504 LOC103021504,LOC108442331 coding downstream 636822 1138245 ~ 1146382 (-)
LOC103044599 glis1,LOC107602512,LOC106952155 coding upstream 4433 1796561 ~ 1833032 (-)
ndc1 ndc1 coding upstream 43613 1835741 ~ 1858224 (-)
LOC103041746 LOC103041746,LOC108432452,LOC107602511 coding upstream 68285 1860413 ~ 1862727 (-)
LOC103038761 NA coding upstream 160610 1952738 ~ 1967670 (-)
LOC103039897 NA coding upstream 206972 1999100 ~ 2005172 (-)
G589 rps8,rps8a,LOC107674081,LOC107688507,LOC107602544 non-coding downstream 19581 1757980 ~ 1763623 (-)
G504 NA non-coding downstream 26890 1754379 ~ 1756314 (-)
G502 hectd3,LOC107729394 non-coding downstream 29350 1751182 ~ 1753854 (-)
G496 hectd3 non-coding downstream 45287 1736394 ~ 1737917 (-)
G476 ptbp1a,LOC107729315,LOC107584874,LOC108432475,LOC107602545,LOC107674042,LOC107688524,LOC107732511 non-coding downstream 260459 1511045 ~ 1522745 (-)
G608 NA non-coding upstream 85381 1877509 ~ 1894453 (-)
G616 sept2 non-coding upstream 224428 2016556 ~ 2035389 (-)
G644 NA non-coding upstream 274447 2066575 ~ 2067409 (-)
LOC111192756 NA non-coding upstream 284947 2077075 ~ 2079605 (-)
G653 NA non-coding upstream 300295 2092423 ~ 2092992 (-)
LOC111197534 NA other downstream 927044 855579 ~ 856160 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other downstream 1112489 589669 ~ 670715 (-)
yipf1 yipf1 other upstream 72387 1864515 ~ 1873127 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other upstream 128352 1920480 ~ 1928255 (-)
znf414 NA other upstream 631585 2423713 ~ 2434401 (-)
G807 NA other upstream 758088 2550216 ~ 2600511 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other upstream 1118626 2910754 ~ 2970340 (-)

Expression


Co-expression Network