LOC103021504 (LOC103021504,LOC108442331)


Basic Information

Item Value
gene id LOC103021504
gene name LOC103021504,LOC108442331
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 1138245 ~ 1146382 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245116.3
GACCACAGGAGCTTCTGCAGGACCACCCTCACAATGAGCATCTCACACTGGACTAACACTGGTATTACTGGGAAACTCTGATGGTAAATCGGACTGGAAGTTTCTGCAAGTAGATTTCACTGGAACTTTCTACTTGGAACTTTTTGATGGTATATAATTTGCTGGCATATCAGATTGAAACACTCTTCTGGAAGATTGGACTGGAACACTTTGTTGGTGGACCATATTTGGACACTCTGCTGGTAGATCAGACCAGAACTCCCTTCTGGAAGATTGGACTCTAAGATACTGCTGGTAGACTAGACCTGAAATCTTTTCTGGAAGACTGGATTGGAACTTTCTGCTGGTATATCAGACCAGAACTCTCTTTTGGAAGATTGGACTCTAAGATTCTGCTGATAGATCAGACTGGAAATTTTTGCCAGATAATTGAATTGGAACTTTCTGTTGGAAGACTAGACCAGAACTGCTTCTGCTGAAAGAACAGACTTTGAGATTCTGCTGGTTAATCAGACCAGAACCAACTACTGGAAGATCAGACTCTAAAATTCTGCTGGTAGATCGAACCAGAACTCTTTGCTGGAAAATCAGATCAGAACTCTCTGCTGGAAGATCAGACCAAAACCATCTACTGGTAGACCAGGCTCTGAGATTTTGCTGGTAGATCAGACTTAAACTACTCAAACGGTTGATTTCTGATAGTCCAGGTCTATTTGTTTGGGTCATGGCGAACACGTGTCTGCAGTTGACTGGTTTTCTGATCAGTCTTCTCGGCTGGGTCGCCCTCATCATCGCCACAGCAACCAACGAGTGGGTGATCACCTGCAAGTATGGCATGAACACCTGCAGGAAGATGGACGAGCTGGGCGCCAAGGGCCTGTGGGCGGAGTGTGTGATCTCTACATCGCTGTACCACTGCATCACCCTCAACAAGATCCTGGAGCTTCCCGCGTATATCCAGACGGCGCGGGCGCTGATGATCACAGCCTGTATTCTGGGTTTACCCGCCGCTGCCATGCTGCTGGTCTCTATGCCCTGTGTTAACCTGGGGGGTGAAGAGCAGAGCGCCAAGAACAGGCAGGCCATGCTGGGAGGAACCATAACACTGATAGTGGCGCTGTGTGGGGTCATTTCCACCGTCTGGTTCCCGATCGGATCGTATCAGGAGCAGGACCTGATGACGTTCGGGTTCTCGCTGtactcgggctgggtcggggcGGCGCTGTCTCTGCTGGGCGGGTTTATGATCGTGTGCTGCGCGGTGGAGTCTTCAGCACCGTACACCGAAAACAACCGCTTCTATTACTCCAGACACGGACAGGCCACGCCCACCAACCCCTCCTCCACCAATCACGCCAAGAGCGCTCACGTGTAGTCCCGGGATTACCGTCCAGCTGCCCAGAGGAGCATTACAGCCTAATTCCCCTCAACCCAATCCcattcctcctctctcttttactgactctctcgctctctctcttttactttcagtctttcactctctgttgctctttctctctcttttattctctcactTCCTGCAGCTCTTTCTCAGTTTCTTGCTATCTTTCATTCTCGTCCTTAAACTCTCTCATTTTCGGTCTTTCGCTCATCCTCAATCTTtcaatatctctctttctctctctttctctgactctctttctcaatATTTTGCTATATCTTTCTCCTTTTATTCTCCTGCTTTTGCTCTTCCTCAATCTTTggctatctctctcttttattgtctctctttcactttttccCTTTGCTctttccctatctctctctcactttttctttatctGACTCTGACGCTCTTTCgctctttctcaatctctcctTCTTACTCTTTCACTTTTGTtcaatt

Function

NR:

description
claudin-11-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245116.3 True 1867 mRNA 0.48 3 1138245 1146382

Neighbor

gene id symbol gene type direction distance location
LOC103043916 NA coding downstream 266266 864798 ~ 871979 (-)
LOC103025162 NA coding downstream 424264 708344 ~ 713981 (-)
pxylp1 pxylp1 coding downstream 612738 504270 ~ 525507 (-)
LOC103031067 NA coding downstream 674411 448578 ~ 463834 (-)
LOC111195070 LOC108442280 coding downstream 834497 295258 ~ 303748 (-)
LOC111192362 NA coding upstream 346784 1493166 ~ 1496427 (-)
rabggtb rabggtb,LOC107732517,LOC107584851,LOC107576861 coding upstream 561357 1707739 ~ 1717654 (-)
acadm acadm,LOC107674066,LOC107602542,LOC107688505,LOC107584839 coding upstream 573430 1719812 ~ 1729386 (-)
best4 best4,LOC106569841,LOC108262062 coding upstream 617882 1764264 ~ 1772891 (-)
LOC103045337 NA coding upstream 636822 1783204 ~ 1792128 (-)
G358 NA non-coding downstream 72316 1065570 ~ 1065929 (-)
G357 NA non-coding downstream 73599 1064294 ~ 1064646 (-)
G354 NA non-coding downstream 98829 1039060 ~ 1039416 (-)
G349 NA non-coding downstream 104588 1033378 ~ 1033657 (-)
G338 NA non-coding downstream 105354 1031855 ~ 1032891 (-)
G393 NA non-coding upstream 32570 1178952 ~ 1179168 (-)
G425 NA non-coding upstream 300293 1446675 ~ 1446882 (-)
G471 NA non-coding upstream 341498 1487880 ~ 1538059 (-)
G474 NA non-coding upstream 342906 1489288 ~ 1491283 (-)
G476 ptbp1a,LOC107729315,LOC107584874,LOC108432475,LOC107602545,LOC107674042,LOC107688524,LOC107732511 non-coding upstream 364663 1511045 ~ 1522745 (-)
LOC111197534 NA other downstream 282085 855579 ~ 856160 (-)
LOC103037308 LOC108440474,LOC108278112,LOC107585786,LOC107669856,LOC107745208 other downstream 467530 589669 ~ 670715 (-)
yipf1 yipf1 other upstream 718133 1864515 ~ 1873127 (-)
gtf2b tf2b,gtf2b,LOC107585659,LOC107693714,LOC107718116,LOC107691461 other upstream 774098 1920480 ~ 1928255 (-)
znf414 NA other upstream 1277331 2423713 ~ 2434401 (-)
G807 NA other upstream 1403834 2550216 ~ 2600511 (-)
LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 other upstream 1764372 2910754 ~ 2970340 (-)

Expression


Co-expression Network