LOC103047885


Basic Information

Item Value
gene id LOC103047885
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 16439618 ~ 16451002 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245976.3
AAGTAAGGAGGCCTGTGAGAAGCGGAAGAGAACACCTGTTACCAGCGCTGTTAAGTCCGCGCATTCACTGTGTTCTGCGTCTCAGAGCAGAATGGCGCTCCTGATCACCTCTATCTACCTGCTGTGTGTAGCCGCGGCGCTCGGCCAGCAGGACGGCTGTGTGTGGGACTCCGGCGCGGAGGTGAAGCAGGGACTGGACCCGGCGTCCAGGGAGGCGGGCGCGACCACCGCAGCTCACCTGCCGGAGGTTCGGGAGGACGAGCGCTGCCAGGCGGAGTGCTGCGGAAGGGACGACTGCCAGCTGGCCGTGATCGGAACCCCCGCGGACGGCCTGCCCGAGTGCTTTCTAGTGAACTGTCTGAAGGATGGAAAAGATGTGTGTAGTTTAGTGCCGAGCACCCAGTTCAGATCATACCGGAAGATCAGCAGCGAGCCCGAAACCCGCTCCTCCAACATCTCCTCAGATGACTGCCGTACCCAGAAGGTCGTAGGTAATTGCCGAGCTTCTTTTCCTCGATTCTACTATGACGTCACCAACCAAACCTGCAAACCCTTTACCTATGGTGGATGTGGAGGCAACAATAACAACTTCCTCACACTGCAGGAGTGTGAAACAGCGTGTACTGGGGTAACAGGTGATTTAATTGTTGTCCCTCAAACCATCCAAAAGCGCAGAATGGTAGAATCTGGGACAACTGAAGATACCACTCCTACAGCTCCACTGCCTACAATGACATCAAAGGAGTTTGCAGagaagTGTCAGGCGGAGAAAAAGGTGGGGCCCTGCAGGGCGTCAATGCCTCGCTTCTTCTACAATAGTGGGACCTGCCAGAGGTTTACATACGGTGGATGCAAGGGCAACAATAACAACTATCTCTCAGAGGAGGAGTGCATGAAAACCTGCACAGTGACTGTTGTGGACGACGTCACAGataccacacccACGACTCCACCACCTAAAAAGGCATCCGATGAGTATGcagAGAAGTGCCTTGCTCCTGCTCATACTGGAATGTGCCGGGGGTCTTTTACGATGTTATATTTTGATGCCAGCACTCAGTCCTGCAAGTTCTTCACCTACGGAGGCTGTGGTGGAAACAGGAACCGGTACACATCTGAGGAGGAGTGCATGTCCCAGTGTAAAGATGGGGAATTTGATGAGCATGGACACAGGAGACGTGACCGCTGGACTCCAGCCTTCTTCCTGGTGGCAACACTGGCTGTAATATCAGTGATACTGCTTGTTGGCCTGCTGCTGATCTCCTCTCGCCGGAACAAAAAGCTTCTGACCATTACACTGGACGATAAGCAGGAGCTGCTGCCCGAGGAGTATCCTCCTGCAGTGgaaacacctaaaaaataatacatatctcTCCTCTGTCAGCGCTGCATTGCTACACTCCAAAACTAGTCTAACAGCCCTGATTCACAATATCAATGTCTGAGAGATATTTAGAAGAAACCATTTAGTTCTATATCATTTCCTGcaatgaaaacaattaaaagcaTGTGTAATATGGTCTGTAAAGTTAATCACtgatgttaatattttttaggCAATCCGGAGACATTTGCTTTtgtaagagttgttattattgatTATAGTAAAACTGGATTTGCTGTTCTGTTCTAAATTATTAGCACGGTTAAAGAATCTGGAACTTGAGAATGAGAGTTATAGGACTGAAACCTTGTTGTTTCCTAAACTTTAAGAAAATCTttaatcattatcattattatcgaTGTTGATAAAACATGGTGGCATTGTACATCTTCTCCATTGTGATGTACATAATTTATACCAAACTGGGAGTAATTTATCAAAAGATGACTGGTTGAAAGCACAATAATTagttaattcaataaaacatctTTGCTGTCATACTAAAACCTTTTAAATTTTTGCAGATTTTGACTTTTTGCCAtcatatagaaatataaaattagTTCAGCCTTTCATGTTTCCCCCCCCCCATTTATATAGTTTTTCTTATTAATTCATTATACATGGGTTTAACACTACACTCCCACATTAGATAAGGGCAGCATATTTAAATGGTACACAGCAGAACATGCTGACTCAACAGAGTAGCTAAAGTGTATGCACATCCTTATTTTGCCACTACCTTTTATGGTCTTATTCATATACACTTTACTTATGGTTTGTTTAAtgtacatacaaaaataattgaACTAACTGAGAACTGTTACTATACTTTTACTAATCACTAAATActgttaaatttcatacaaaaaataatcaaa

Function

GO: NA

KEGG:

id description
K23421 SPINT2; Kunitz-type protease inhibitor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245976.3 True 2265 mRNA 0.45 10 16439618 16451002

Neighbor

gene id symbol gene type direction distance location
plekhg2 NA coding downstream 27019 16339721 ~ 16412599 (-)
supt5h supt5h,LOC107586261,LOC107657557 coding downstream 128969 16291524 ~ 16310649 (-)
LOC103025059 tnfaip1,LOC108425816,LOC108277497,LOC107586309,LOC107728221,LOC107597551,LOC107657549,LOC107729096,LOC107662792 coding downstream 280957 16148608 ~ 16158661 (-)
sgsm2 sgsm2,LOC108277483,LOC107728220,LOC107729122 coding downstream 296710 16076499 ~ 16142908 (-)
ulk2 ulk2,LOC107717276,LOC107657566 coding downstream 508605 15895659 ~ 15931013 (-)
LOC103030646 NA coding upstream 91946 16542948 ~ 16547740 (-)
LOC103044128 ckm,ckmb,LOC107690449,LOC107718278,LOC107601735 coding upstream 168109 16619111 ~ 16622984 (-)
LOC103043199 NA coding upstream 205233 16656235 ~ 16658680 (-)
zc3h4 zc3h4,LOC107683834,LOC107601737,LOC107690443,LOC107718283,LOC107585556 coding upstream 223099 16674101 ~ 16686184 (-)
LOC103041159 NA coding upstream 1431774 17882776 ~ 17914128 (-)
G4197 NA non-coding downstream 126948 16312358 ~ 16312670 (-)
G4196 NA non-coding downstream 149892 16288143 ~ 16289726 (-)
G4192 chp2,LOC108425820,LOC108277499,LOC107657559,LOC107586310,LOC106580765 non-coding downstream 162879 16271630 ~ 16276739 (-)
G4147 NA non-coding downstream 247088 16191690 ~ 16192530 (-)
LOC111192357 NA non-coding downstream 364485 16048039 ~ 16075133 (-)
G4215 NA non-coding upstream 29333 16480335 ~ 16480650 (-)
G4245 NA non-coding upstream 86729 16537731 ~ 16537940 (-)
G4252 NA non-coding upstream 110518 16561520 ~ 16562762 (-)
G4253 NA non-coding upstream 128480 16579482 ~ 16579867 (-)
G4254 mark4,LOC106612588,LOC106580867 non-coding upstream 146586 16597588 ~ 16597900 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other downstream 156986 16278005 ~ 16282632 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other downstream 1967866 14380755 ~ 14471752 (-)
G3612 NA other downstream 2155393 14283623 ~ 14284225 (-)
LOC111189390 NA other downstream 2306381 14124173 ~ 14133237 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other downstream 2867246 13544500 ~ 13572372 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other upstream 193490 16644492 ~ 16653968 (-)
LOC103040336 mpzl2 other upstream 1532883 17983885 ~ 17998749 (-)
G4621 NA other upstream 1579360 18030362 ~ 18040766 (-)
LOC103031959 NA other upstream 1745578 18196580 ~ 18226004 (-)
LOC103038769 NA other upstream 3188363 19639365 ~ 19648822 (-)

Expression


Co-expression Network