LOC103025996 (LOC103025996,LOC108411840)


Basic Information

Item Value
gene id LOC103025996
gene name LOC103025996,LOC108411840
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22044722 ~ 22050555 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247641.3
TATTTGAGACGCTTATTGGACCACCGTTTGCTGCTTCACTGTGTTTTTACTTTGGCCGCACCCCTCCCTGAGCCTGCATTCCGGCGCATGCGCCGTGCGGCTTCTCGTGTGATGGCTGCGCGCGCGCTCTCCCCGCGGCCCGGTTCGGCTCCCGGTCCCGGTCTGCTGGACTTTAGGTCGGGCGCGCGCCTGCGGGATCTGCAGCGGCTCATAACGGAGCTAAGCGCGCATGAGCAGCGCGAGCATGACGACCAGCGCGCGCTGGAGCTTCACACAGCCAAGGACTTCATCTTCTCTGTgctggGCATGGTGCAGAAGCTGGACCAGAAGCTTCCAGTCGCTAATGAGTACCTGCTGCTGTCGGGTGGCGTGCGGGAGGGCGTGGTGGACATGGAACTGGATGAGATGAGCGTGTACGCCCGCGGGACTGACTATGATGTGGACTACACTCTGCTGGTCCCTGCCCTAAAGTTGCACGACCGCAACCAGCCAGTCACCCTGGACATGCGGCACTCGGCACCAGGCCACTCATGGCTTAGTCTGCGGCTCTTTGACGAGGGAACCGTGGGCAGGTGGAAGGACTGCTGCACGGAGGCTGACCACGATGTCAGCGAGGTCAACAACTACTTCTTCTCTCCTACTCTGGTTTCTGACTGGTTCCACGAGGCTCTGGGCTCTGTCCTGAGGGAGCTGGGTCGTAAGCCCCAGAGGGGGACACCTCGGGTAGAGAAGCTGGAGCACTGTGGGACGGTCATCTCCATCATCCTGGCCGCGGGTGGGAGTCGGGTCTTGTACGACGTCGTGCCCGTCGTTTCCTTTAAGGGTTGGCCAGCTGTAGCTCAGGGATGGCTGATGGAGAATCACTTCTGGGATGGCAAGATCACAGAGGAGGAGGTGATCAGTGGCTTCTACCTGCTGCCGACCTGCTCACCCACAGGCCGCAAGGAAAACGAGTGGCGACTGTCATTCGCACGCAGCGAGGTCCAGCTGAAAAAGTGCATCTCCACTGGCCTGATGCAGGCGTTCCAGGCCTGCAAGGTCCTGATCAGCAAGCTGCTGCTGTCACGAACCAAAGCGGTCAGTCCGTACCACCTGCGCTCGCTAATGCTGTGGGCCTGCGATCGACTGCCCCATGCCTACCTGGCTCAGGAGGACCACTCTGCCCACTTCCTGCTGGGTCTGCTGgatgacctgcagcactgtttGGTCAATAAGGCGTGTCCCAACTACTTTATTCCACAGTGCAACATGTTGGAGCACCTGAGTGAATCTGCAGCCATCCTGCACGCCCGCCGCCTCTCCTCTGTGCGCTCGGACCCAGCGGAGCACCTGCGCAGCGCCATCCAGCATGCCGGTGTCTCTGCCAATTTGCCTCCAGCCACGCCCACTACACCACCTGATCCCTCTTCTGACCCTGCTTCTGATGCCACCCATGACCACAGCCTTGCACAGAAGCTTCAGCAGCTGGTGACGGAGAATCCCGGGAAATCCATCTCTGTCTTCATTAACCCTGACGACGTCACACGGCCACACTTCCGCATTGACGACAAGTTCTTCTGAGGCCATGCCCacactgtaataactgtgtcaCTCATTGTGTTGTTTGTTATGCCACACAGAGTCACTGCCTTGCCGGCTGGCTTCACAATGGTGAAAGTGTTTTCACAACCAGCTACAGATAGTCGGTTTATTGACTAACAAACCAAAACAGACTGTTTAGAGAATTCGGGAGCCGAAGTGTGAGAAGTAACTGTGTAATTTCGAGCTTAAGCAACAACTCAACTAATGCTGAGCAGACTGTGGAGGAAAGAATGTACAATAAAGAATGTGCTGaaggagaacagagagaaaggaaaagacagagagagagagagagagacttgggcctaatcccatttcaccccttggccctaccccttagcACTATCCCTCTACCCTTATGCATGTCTAGATGTAGAGcatcctgattcttgttgggctggaggggtaggttaggggaagtGTTAAGGCTATATGGCTTTTTAGATGGATATTTGATGCAAGTTGGTGGCACAAGTGACCAAAGAAACTATAATAAAGCAATTTCCTTATACCCACTATATaactactatattactatagtttaagatgtagtttcaatgttttatggtcaaGTCCTTCATAACAAGCATGAAACAATCAatagtagttttagtagtagtaatagcagtcaCCTccatagctagctagcaaacTTTCCTGGTTTatcttaaatggtgcaacagacggaagatgaaagctaataaaagctacCCTCTTAGGTGGGATACacaagagaaatgggattgggccctcACTTGCACTCAAGCGCAAGTACTGCTGTAGGTGGTTaggctgtctgtgtgtgtaagaatgAAAGATGAAAGTATGTTATTACATTAGCTGCATTGCACACAGATATTAGAAtgtattcattatatattattgctGTGAGACCAAAACATCGTAACTTCTTTGTAACATTTCTGTTCATTAATGTCCATCTGTTTCTCTAGCCACATATACAAATCATACAAACCATTTCACCTGTGTTAGAATTCACATCCTAATTCACTGGGCTTTAATTAATGTAGTTTCTGAGTAAGTGTGTCGAGTTCACCTCTGTGTAAATACCTCTGTGCATAAAAGGCCCCGCCCACTTCACTTAAGCGGACCAATCAGCTGCCTGCTGAAAGATGACTGTCAGCCATCAATCACAGCGCTCTAATTCTGGCACTTCTGACACTCCCAGATGAGCCCTCAGCACCTACAGGGACCAATCACACTGCCTTATTGCCCAtgccagccaatcagagtggGGCTTGTTtatatctgagtgtgtgtgtgtgtatatgtgtatatgtttgtgtgtgtgtgtgtgtgtgtgttagaagaACACTacagtttgtgtgtatatatatatatatatcactgttATGATGCTGCACCGTGTGTTTCACTGCTTTGTTTGATTAATAAATTTGTACTGCAAGACAACAATTCA
>XM_015605424.2
TATTTGAGACGCTTATTGGACCACCGTTTGCTGCTTCACTGTGTTTTTACTTTGGCCGCACCCCTCCCTGAGCCTGCATTCCGGCGCATGCGCCGTGCGGCTTCTCGTGTGATGGCTGCGCGCGCGCTCTCCCCGCGGCCCGGTTCGGCTCCCGGTCCCGGTCTGCTGGACTTTAGGTCGGGCGCGCGCCTGCGGGATCTGCAGCGGCTCATAACGGAGCTAAGCGCGCATGAGCAGCGCGAGCATGACGACCAGCGCGCGCTGGAGCTTCACACAGCCAAGGACTTCATCTTCTCTGTgctggGCATGGTGCAGAAGCTGGACCAGAAGCTTCCAGTCGCTAATGAGTACCTGCTGCTGTCGGGTGGCGTGCGGGAGGGCGTGGTGGACATGGAACTGGATGAGATGAGCGTGTACGCCCGCGGGACTGACTATGATGTGGACTACACTCTGCTGGTCCCTGCCCTAAAGTTGCACGACCGCAACCAGCCAGTCACCCTGGACATGCGGCACTCGGCACCAGGCCACTCATGGCTTAGTCTGCGGCTCTTTGACGAGTTGCAAGCTAACATCTCCCTCTTCCACGAGGGAACCGTGGGCAGGTGGAAGGACTGCTGCACGGAGGCTGACCACGATGTCAGCGAGGTCAACAACTACTTCTTCTCTCCTACTCTGGTTTCTGACTGGTTCCACGAGGCTCTGGGCTCTGTCCTGAGGGAGCTGGGTCGTAAGCCCCAGAGGGGGACACCTCGGGTAGAGAAGCTGGAGCACTGTGGGACGGTCATCTCCATCATCCTGGCCGCGGGTGGGAGTCGGGTCTTGTACGACGTCGTGCCCGTCGTTTCCTTTAAGGGTTGGCCAGCTGTAGCTCAGGGATGGCTGATGGAGAATCACTTCTGGGATGGCAAGATCACAGAGGAGGAGGTGATCAGTGGCTTCTACCTGCTGCCGACCTGCTCACCCACAGGCCGCAAGGAAAACGAGTGGCGACTGTCATTCGCACGCAGCGAGGTCCAGCTGAAAAAGTGCATCTCCACTGGCCTGATGCAGGCGTTCCAGGCCTGCAAGGTCCTGATCAGCAAGCTGCTGCTGTCACGAACCAAAGCGGTCAGTCCGTACCACCTGCGCTCGCTAATGCTGTGGGCCTGCGATCGACTGCCCCATGCCTACCTGGCTCAGGAGGACCACTCTGCCCACTTCCTGCTGGGTCTGCTGgatgacctgcagcactgtttGGTCAATAAGGCGTGTCCCAACTACTTTATTCCACAGTGCAACATGTTGGAGCACCTGAGTGAATCTGCAGCCATCCTGCACGCCCGCCGCCTCTCCTCTGTGCGCTCGGACCCAGCGGAGCACCTGCGCAGCGCCATCCAGCATGCCGGTGTCTCTGCCAATTTGCCTCCAGCCACGCCCACTACACCACCTGATCCCTCTTCTGACCCTGCTTCTGATGCCACCCATGACCACAGCCTTGCACAGAAGCTTCAGCAGCTGGTGACGGAGAATCCCGGGAAATCCATCTCTGTCTTCATTAACCCTGACGACGTCACACGGCCACACTTCCGCATTGACGACAAGTTCTTCTGAGGCCATGCCCacactgtaataactgtgtcaCTCATTGTGTTGTTTGTTATGCCACACAGAGTCACTGCCTTGCCGGCTGGCTTCACAATGGTGAAAGTGTTTTCACAACCAGCTACAGATAGTCGGTTTATTGACTAACAAACCAAAACAGACTGTTTAGAGAATTCGGGAGCCGAAGTGTGAGAAGTAACTGTGTAATTTCGAGCTTAAGCAACAACTCAACTAATGCTGAGCAGACTGTGGAGGAAAGAATGTACAATAAAGAATGTGCTGaaggagaacagagagaaaggaaaagacagagagagagagagagagacttgggcctaatcccatttcaccccttggccctaccccttagcACTATCCCTCTACCCTTATGCATGTCTAGATGTAGAGcatcctgattcttgttgggctggaggggtaggttaggggaagtGTTAAGGCTATATGGCTTTTTAGATGGATATTTGATGCAAGTTGGTGGCACAAGTGACCAAAGAAACTATAATAAAGCAATTTCCTTATACCCACTATATaactactatattactatagtttaagatgtagtttcaatgttttatggtcaaGTCCTTCATAACAAGCATGAAACAATCAatagtagttttagtagtagtaatagcagtcaCCTccatagctagctagcaaacTTTCCTGGTTTatcttaaatggtgcaacagacggaagatgaaagctaataaaagctacCCTCTTAGGTGGGATACacaagagaaatgggattgggccctcACTTGCACTCAAGCGCAAGTACTGCTGTAGGTGGTTaggctgtctgtgtgtgtaagaatgAAAGATGAAAGTATGTTATTACATTAGCTGCATTGCACACAGATATTAGAAtgtattcattatatattattgctGTGAGACCAAAACATCGTAACTTCTTTGTAACATTTCTGTTCATTAATGTCCATCTGTTTCTCTAGCCACATATACAAATCATACAAACCATTTCACCTGTGTTAGAATTCACATCCTAATTCACTGGGCTTTAATTAATGTAGTTTCTGAGTAAGTGTGTCGAGTTCACCTCTGTGTAAATACCTCTGTGCATAAAAGGCCCCGCCCACTTCACTTAAGCGGACCAATCAGCTGCCTGCTGAAAGATGACTGTCAGCCATCAATCACAGCGCTCTAATTCTGGCACTTCTGACACTCCCAGATGAGCCCTCAGCACCTACAGGGACCAATCACACTGCCTTATTGCCCAtgccagccaatcagagtggGGCTTGTTtatatctgagtgtgtgtgtgtgtatatgtgtatatgtttgtgtgtgtgtgtgtgtgtgtgttagaagaACACTacagtttgtgtgtatatatatatatatatcactgttATGATGCTGCACCGTGTGTTTCACTGCTTTGTTTGATTAATAAATTTGTACTGCAAGACAACAATTCA

Function

NR:

description
protein MB21D2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247641.3 False 3022 mRNA 0.51 3 22044722 22050555
XM_015605424.2 True 3052 mRNA 0.51 3 22044722 22050555

Neighbor

gene id symbol gene type direction distance location
LOC103025167 NA coding upstream 7078 22032579 ~ 22037644 (+)
phox2a phox2a,LOC107738288,LOC107679437 coding upstream 130954 21908273 ~ 21913768 (+)
clpb clpb,LOC107568463,LOC108261447,LOC108276567 coding upstream 153745 21824927 ~ 21890977 (+)
LOC103042160 LOC108412514 coding upstream 783524 21248853 ~ 21261198 (+)
LOC103042479 ecel1 coding upstream 798900 21189741 ~ 21245822 (+)
il1rap NA coding downstream 88032 22138587 ~ 22162195 (+)
LOC103022049 NA coding downstream 114844 22165399 ~ 22190308 (+)
dync2h1 dync2h1,LOC108413322,LOC107566891 coding downstream 207603 22258158 ~ 22329193 (+)
aasdhppt aasdhppt coding downstream 456312 22506867 ~ 22515457 (+)
LOC103031483 NA coding downstream 536635 22587190 ~ 22594557 (+)
G5333 inppl1,inppl1a,LOC108261207,LOC107710497 non-coding upstream 105516 21932689 ~ 21939206 (+)
G5331 inppl1,LOC108261207,LOC107731861 non-coding upstream 119843 21923120 ~ 21924879 (+)
G5329 NA non-coding upstream 124225 21916582 ~ 21920497 (+)
G5067 arap1,LOC107729594,LOC107557643,LOC107701599 non-coding upstream 375070 21662490 ~ 21669652 (+)
G5069 NA non-coding upstream 385976 21655037 ~ 21658746 (+)
G5371 NA non-coding downstream 76443 22126998 ~ 22129294 (+)
G5379 NA non-coding downstream 118557 22169112 ~ 22197485 (+)
G5382 NA non-coding downstream 142378 22192933 ~ 22193883 (+)
G5416 NA non-coding downstream 163856 22214411 ~ 22215051 (+)
G5455 NA non-coding downstream 293521 22344076 ~ 22345782 (+)
G5026 NA other upstream 1045522 20983707 ~ 20999200 (+)
LOC103037169 NA other upstream 1461848 20558523 ~ 20582874 (+)
LOC107197594 NA other upstream 1493087 20549191 ~ 20551635 (+)
G4775 LOC108411134 other upstream 2879091 19160731 ~ 19165631 (+)
G4612 NA other upstream 3284864 18759375 ~ 18759858 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other downstream 5967 22056522 ~ 22154926 (+)
LOC103043812 gria4a,gria4,LOC107725765,LOC107670112,LOC107689577,LOC107566895,LOC107560842,LOC107756206,LOC107756230 other downstream 357001 22407556 ~ 22524746 (+)
LOC103041654 chordc1,LOC108412466 other downstream 592055 22642610 ~ 22673984 (+)
LOC103045948 grm5b,LOC108411478,LOC107670133,LOC107737424,LOC107731813,LOC107669866 other downstream 658357 22708912 ~ 22758213 (+)
G5620 LOC107694033,LOC107752375,LOC107592755,LOC105030986 other downstream 852211 22902766 ~ 22923081 (+)

Expression


Co-expression Network