G4612


Basic Information

Item Value
gene id G4612
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18759375 ~ 18759858 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU6209
tgtgtgtctgctctTGTCTGAAAGCCATGAATACCTTGTTGTGTGtttaggaaaaaaatgagagagaaaactTCAAGCCCTGGAAAGGGCAtgtctcagacacacacacacacacacacacacacacactttcaagcaTTCTGTGATACGcagttaccacagcaacccacacagataccacacgcaacccacacagataccacacagcaacccacacagataccacacagcaacccacacagataccacacagcaacccacacagataccacacagcaacccacacaggtaccacacagcaacccacacagataccacacagcaacccacacagataccacacagcaacccacacagataccacagcaacccacacagataccacacagcAACCCACAACGATACcacacagcaacccacacaGATACCACACAGCAACCCACAACGATACCACACAGcaacc
>TU6210
tgtgtgtctgctctTGTCTGAAAGCCATGAATACCTTGTTGTGTGtttaggaaaaaaatgagagagaaaactTCAAGCCCTGGAAAGGGCAtgtctcagacacacacacacacacacacacacacacactttcaagcaTTCTGTGATACGcagttaccacagcaacccacacagataccacacgcaacccacacagataccacacagcaacccacacagataccacacagcaacccacacagataccacacagcaacccacacagataccacacagcaacccacacaggtaccacagcaacccacacagataccacacagcaacccacacagataccacagcaacccacacaGATACcacacagcaacccacacagataccacagcaacccacaacGATACCACACAGCAACCCACAACGATACCACACAGcaacc
>TU6211
tgtgtgtctgctctTGTCTGAAAGCCATGAATACCTTGTTGTGTGtttaggaaaaaaatgagagagaaaactTCAAGCCCTGGAAAGGGCAtgtctcagacacacacacacacacacacacacacacactttcaagcaTTCTGTGATACGcagttaccacagcaacccacacagataccacacagcaacccacacagataccacacagcaacccacacagataccacacagcaacccacacaggtaccacacagcaacccacacagataccacacagcaacccacacagataccacacagcaacccacacagataccacagcaacccacacaGATACcacacagcaacccacacagataccacagcaacccacaacGATACCACACAGCAACCCACAACGATACCACACAGcaacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6209 True 463 TUCP 0.48 2 18759375 18759858
TU6210 False 436 TUCP 0.45 3 18759375 18759858
TU6211 False 416 TUCP 0.46 3 18759375 18759858

Neighbor

gene id symbol gene type direction distance location
LOC103035466 NA coding upstream 260244 18487006 ~ 18499131 (+)
trnag-ucc NA coding upstream 355599 18403705 ~ 18403776 (+)
trnaw-cca NA coding upstream 358250 18401054 ~ 18401125 (+)
LOC103034176 LOC108443019,LOC107663551,LOC107572208,LOC107557657,LOC107679443,LOC108277854 coding upstream 359237 18389428 ~ 18400138 (+)
LOC103036794 map4k1,LOC108443018,LOC107757316,LOC107679433,LOC101883459,LOC104956018 coding upstream 373056 18332339 ~ 18386319 (+)
LOC103038796 mtnr1ba,LOC108413652,LOC107745177,LOC107585812,LOC107705472,LOC107669925 coding downstream 145788 18905646 ~ 18929820 (+)
LOC103030891 LOC108278224,LOC107558831,LOC107705626 coding downstream 308605 19068463 ~ 19101318 (+)
LOC111192961 NA coding downstream 1081361 19841219 ~ 19841977 (+)
psmd2 psmd2 coding downstream 1761356 20521214 ~ 20536207 (+)
LOC107197593 NA coding downstream 1777862 20537720 ~ 20545404 (+)
G4611 NA non-coding upstream 1243 18756760 ~ 18758132 (+)
G4608 NA non-coding upstream 41735 18716961 ~ 18717640 (+)
G4591 NA non-coding upstream 431368 18314554 ~ 18328007 (+)
G4582 paf1 non-coding upstream 453123 18258571 ~ 18306252 (+)
G4587 NA non-coding upstream 453226 18305358 ~ 18306149 (+)
G4601 NA non-coding downstream 18145 18778003 ~ 18778514 (+)
G4614 NA non-coding downstream 46666 18806524 ~ 18806901 (+)
G4600 NA non-coding downstream 80108 18839966 ~ 18875470 (+)
G4616 NA non-coding downstream 96331 18856189 ~ 18858801 (+)
G4617 NA non-coding downstream 116252 18876110 ~ 18876899 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other upstream 337019 18041289 ~ 18422356 (+)
G4550 sik3 other upstream 685712 18071964 ~ 18073663 (+)
LOC103039709 NA other upstream 747272 18010178 ~ 18012103 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other upstream 2136306 16619046 ~ 16623069 (+)
G4221 NA other upstream 2213521 16542942 ~ 16545854 (+)
G4775 LOC108411134 other downstream 400873 19160731 ~ 19165631 (+)
LOC107197594 NA other downstream 1789333 20549191 ~ 20551635 (+)
LOC103037169 NA other downstream 1798665 20558523 ~ 20582874 (+)
G5026 NA other downstream 2223849 20983707 ~ 20999200 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other downstream 3296664 22056522 ~ 22154926 (+)

Expression


Co-expression Network