LOC103039709


Basic Information

Item Value
gene id LOC103039709
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18010178 ~ 18012103 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU6069
TGTATGGAGATGAAAACCGTTGTGGCGTGGGGTATCGTGCTTGGGGACGTCATGGTGACGCTCGGGGTCATCCTCATTGTCTATCTCTGTGCCAGCAAGAACACCAGTGCACCTCCTCAGagagCACAGAGACGCCAGCTCACACCAGGCACTGCTCAAACATCTGACACCACTTACCAGGAATTGACTCCGGGAACTCGTAATGCAGATGTGTATTCAGATGTTAAAAGGAAATAATGAGGATTCTGACACAATACACCAGATACAACCTCAACAACAGGTTGATGAGAGTCTCAGCTGTTTTCTTTTCTATATTAGCTGTTAATcagtgttgattttttttgaGGATTGAGCTGTTTTTCACCAAATCAGACTTTAATTATTCATCCTGGTAAGTTCCAGTGTACTCAGCTTTCatcttttaatactttt
>XM_022671146.1
tATAATGGaaaacagaatttaaggtgtatcTAGATTTATGATGGTACTGTGTAAAATACTGTGTTATTTTAATcgttttattattgttactctctctctcaatcagtGTGTGAAGGCTGTATGGAGATGAAAACCGTTGTGGCGTGGGGTATCGTGCTTGGGGACGTCATGGTGACGCTCGGGGTCATCCTCATTGTCTATCTCTGTGCCAGCAAGAACACCAGTGCACCTCCTCAGagagCACAGAGACGCCAGCTCACACCAGGCACTGCTCAAACATCTGACACCACTTACCAGGAATTGACTCCGGGAACTCGTAATGCAGATGTGTATTCAGATGTTAAAAGGAAATAATGAGGATTCTGACACAATACACCAGATACAACCTCAACAACAGGTTGATGAGAGTCTCAGCTGTTTTCTTTTCTATATTAGCTGTTAATcagtgttgattttttttgaGGATTGAGCTGTTTTTCACCAAATCAGACTTTAATTATTCATCCTGGTAAGTTCCAGTGTACTCAGCTTTCatcttttaatacttttatcaGGATTATTAcattaatcagtatattaacAAGTAATAAATAGTATTAATTAGTATCGCTGTGTGAAATAGTTTGCTTACTATTGCTTTGTGCTTGATGCAGAATCTGTACTGTCTTATATCTAATGCTTTTCTAAAACTTCATGTTTATTATTCAGATTAAGATGAAATGCTGTGTAGTGTATCTTCTTTGACCACAGTCAATGTCTGATTTTGTAACATAAAtctcaaattaaattaaatttaaatttaa

Function

GO: NA

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU6069 False 432 lncRNA 0.40 3 18010295 18011849
XM_022671146.1 True 803 mRNA 0.36 3 18010178 18012103

Neighbor

gene id symbol gene type direction distance location
lsamp lsamp coding upstream 136362 17454350 ~ 17873816 (+)
LOC111192859 sae1,LOC107718284 coding upstream 1318419 16689234 ~ 16691759 (+)
LOC103044410 klc3,LOC108425834,LOC107601696,LOC107743695 coding upstream 1366358 16633323 ~ 16643820 (+)
mark4 mark4,si:dkey-31m14.7,LOC107585548 coding upstream 1392248 16561486 ~ 16617930 (+)
LOC107197545 NA coding upstream 1467735 16538471 ~ 16542443 (+)
LOC111192370 NA coding downstream 5656 18017759 ~ 18022389 (+)
LOC103030597 LOC108412477 coding downstream 112591 18124694 ~ 18131953 (+)
sidt2 sidt2 coding downstream 125921 18138024 ~ 18166677 (+)
LOC103032687 gmfg,LOC103032687,LOC108277844,LOC107757325,LOC107679065,LOC107090391 coding downstream 238820 18250923 ~ 18256343 (+)
LOC103033229 psa6,LOC103033229,LOC106612618,LOC105026880,LOC106580837 coding downstream 262722 18274825 ~ 18281029 (+)
G4460 NA non-coding upstream 831 17929724 ~ 18009347 (+)
G4467 NA non-coding upstream 24989 17958512 ~ 17985189 (+)
LOC111192366 NA non-coding upstream 67016 17890228 ~ 17943162 (+)
G4456 NA non-coding upstream 89173 17882588 ~ 17921005 (+)
G4451 NA non-coding upstream 158735 17847764 ~ 17851443 (+)
G4531 NA non-coding downstream 22408 18034511 ~ 18038744 (+)
G4549 NA non-coding downstream 51331 18063434 ~ 18065761 (+)
G4563 NA non-coding downstream 165505 18177608 ~ 18178083 (+)
G4542 NA non-coding downstream 200053 18212156 ~ 18280613 (+)
G4582 paf1 non-coding downstream 246468 18258571 ~ 18306252 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other upstream 1387109 16619046 ~ 16623069 (+)
G4221 NA other upstream 1464324 16542942 ~ 16545854 (+)
LOC103040601 NA other upstream 2184075 15781638 ~ 15826103 (+)
LOC103023550 nf1 other upstream 2847222 15072840 ~ 15162956 (+)
G3790 NA other upstream 2971264 15038555 ~ 15038914 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other downstream 29186 18041289 ~ 18422356 (+)
G4550 sik3 other downstream 59861 18071964 ~ 18073663 (+)
G4612 NA other downstream 747272 18759375 ~ 18759858 (+)
G4775 LOC108411134 other downstream 1148628 19160731 ~ 19165631 (+)
LOC107197594 NA other downstream 2537088 20549191 ~ 20551635 (+)

Expression


Co-expression Network