G3790


Basic Information

Item Value
gene id G3790
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 15038555 ~ 15038914 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU5080
catcatgaatgctctaaaataccaggacattttaaaacaaaatctggtggcttctgcccgaaagctgaagatgggtcgtcactgggtctttcagcaagataatgaccctaaacatgtggccaaatctacacagaaatggttcaccgcacacagaatcaagctcctcccatggccatctcagtccccagacctcaaccccattgaaaacctgtggggtgagctgaagaggagagtgcagaggagaggacccaggtcgttggatgatttagagagaatgtgcaaagaggaatggtcaaagatccctctttctgtattctcccatcttgtgaaacattacaggagaagattaggtgctgtttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5080 True 360 TUCP 0.46 1 15038555 15038914

Neighbor

gene id symbol gene type direction distance location
LOC103047124 ksr1 coding upstream 4896 14972989 ~ 15033659 (+)
wsb1 wsb1,LOC107756317,LOC107587373,LOC107682796,LOC107746651 coding upstream 83211 14940680 ~ 14955344 (+)
LOC103046311 cuedc1,cuedc1b,LOC107672109,LOC107587359,LOC107757269 coding upstream 99721 14906783 ~ 14938834 (+)
LOC103046009 vezf1b,LOC108425912,LOC107756309,LOC107587351,LOC107682824,LOC107672112,LOC108435808 coding upstream 135058 14887299 ~ 14903497 (+)
LOC103045400 zgc:171927,LOC108425914,LOC107672095,LOC107588334,LOC108278279,LOC107683438,LOC107592930,LOC107757416 coding upstream 157923 14875553 ~ 14880632 (+)
LOC103021895 NA coding downstream 12560 15051474 ~ 15066217 (+)
akap1 akap1b,akap1 coding downstream 128546 15167460 ~ 15186395 (+)
LOC103023867 msi2b,msi2,LOC108425902,LOC107587484,LOC107682662,LOC108277875,LOC108435815,LOC105028669,LOC106603292 coding downstream 172743 15211657 ~ 15617787 (+)
LOC103029544 NA coding downstream 670566 15709480 ~ 15729311 (+)
LOC111192347 NA coding downstream 692565 15731479 ~ 15774952 (+)
G3788 NA non-coding upstream 1973 15035942 ~ 15036582 (+)
G3787 NA non-coding upstream 3368 15034766 ~ 15035187 (+)
G3648 eml2,LOC108277999 non-coding upstream 444496 14592933 ~ 14594059 (+)
G3575 NA non-coding upstream 525766 14511140 ~ 14512789 (+)
G3537 NA non-coding upstream 566803 14312208 ~ 14471752 (+)
trnae-uuc_1 NA non-coding downstream 7399 15046313 ~ 15046384 (+)
G3794 NA non-coding downstream 30516 15069430 ~ 15069802 (+)
G3800 NA non-coding downstream 81820 15120734 ~ 15134707 (+)
G3816 NA non-coding downstream 216543 15255457 ~ 15255899 (+)
G3825 NA non-coding downstream 249680 15288594 ~ 15290389 (+)
G3736 NA other upstream 74972 14961173 ~ 14963583 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other upstream 192929 14840293 ~ 14845626 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other upstream 533540 14444558 ~ 14505015 (+)
LOC103035587 NA other upstream 794175 14217807 ~ 14244380 (+)
G3313 sept5b,LOC108425237 other upstream 2054286 12982625 ~ 12984269 (+)
LOC103023550 nf1 other downstream 33926 15072840 ~ 15162956 (+)
LOC103040601 NA other downstream 742724 15781638 ~ 15826103 (+)
G4221 NA other downstream 1504028 16542942 ~ 16545854 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other downstream 1580132 16619046 ~ 16623069 (+)
LOC103039709 NA other downstream 2971264 18010178 ~ 18012103 (+)

Expression


Co-expression Network