G3787


Basic Information

Item Value
gene id G3787
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 15034766 ~ 15035187 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU5077
CCCTTCCTGCCCCATCCCCACCTCTTCCAGTCCCGCCCCAGCCCCGCCCCATCATTATTCAGATTGTCCTGATTGGTCAAAAAAAATCCCGCCAAAAGTATTGACCAATAAGGTTGTTATTCCTATGGAGCAATCACAGCAAGCCTACGAGTGAAATGTGTATTTAAGAGATAGGGGTTAGCGAGATGTGTGAAGGACCGAGAGAACGGAGCAATGGCTTGTGTTTCTGAGGTTGCTGAAAACCAAAGCTTCCCATACCGGGATTCGAACCCGGACCGTCTGGATGAAAGCCAGAAATCCTACGCGTTAGACCATATGGGAGGATCTGTAGAAGAAGAGCACGATGACGAGAATCTAAAAAGGTACCGAACAATGGAGAGCATTCCTGAACCAGTCGCTCAAGGAGCGCTCAAGGATCAAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5077 True 422 lncRNA 0.49 1 15034766 15035187

Neighbor

gene id symbol gene type direction distance location
LOC103047124 ksr1 coding upstream 1107 14972989 ~ 15033659 (+)
wsb1 wsb1,LOC107756317,LOC107587373,LOC107682796,LOC107746651 coding upstream 79422 14940680 ~ 14955344 (+)
LOC103046311 cuedc1,cuedc1b,LOC107672109,LOC107587359,LOC107757269 coding upstream 95932 14906783 ~ 14938834 (+)
LOC103046009 vezf1b,LOC108425912,LOC107756309,LOC107587351,LOC107682824,LOC107672112,LOC108435808 coding upstream 131269 14887299 ~ 14903497 (+)
LOC103045400 zgc:171927,LOC108425914,LOC107672095,LOC107588334,LOC108278279,LOC107683438,LOC107592930,LOC107757416 coding upstream 154134 14875553 ~ 14880632 (+)
LOC103021895 NA coding downstream 16287 15051474 ~ 15066217 (+)
akap1 akap1b,akap1 coding downstream 132273 15167460 ~ 15186395 (+)
LOC103023867 msi2b,msi2,LOC108425902,LOC107587484,LOC107682662,LOC108277875,LOC108435815,LOC105028669,LOC106603292 coding downstream 176470 15211657 ~ 15617787 (+)
LOC103029544 NA coding downstream 674293 15709480 ~ 15729311 (+)
LOC111192347 NA coding downstream 696292 15731479 ~ 15774952 (+)
G3648 eml2,LOC108277999 non-coding upstream 440707 14592933 ~ 14594059 (+)
G3575 NA non-coding upstream 521977 14511140 ~ 14512789 (+)
G3537 NA non-coding upstream 563014 14312208 ~ 14471752 (+)
G3561 blmh,LOC107743628 non-coding upstream 599185 14414289 ~ 14435581 (+)
LOC111190477 NA non-coding upstream 665659 14364465 ~ 14369107 (+)
G3788 NA non-coding downstream 755 15035942 ~ 15036582 (+)
trnae-uuc_1 NA non-coding downstream 11126 15046313 ~ 15046384 (+)
G3794 NA non-coding downstream 34243 15069430 ~ 15069802 (+)
G3800 NA non-coding downstream 85547 15120734 ~ 15134707 (+)
G3816 NA non-coding downstream 220270 15255457 ~ 15255899 (+)
G3736 NA other upstream 71183 14961173 ~ 14963583 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other upstream 189140 14840293 ~ 14845626 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other upstream 529751 14444558 ~ 14505015 (+)
LOC103035587 NA other upstream 790386 14217807 ~ 14244380 (+)
G3313 sept5b,LOC108425237 other upstream 2050497 12982625 ~ 12984269 (+)
G3790 NA other downstream 3368 15038555 ~ 15038914 (+)
LOC103023550 nf1 other downstream 37653 15072840 ~ 15162956 (+)
LOC103040601 NA other downstream 746451 15781638 ~ 15826103 (+)
G4221 NA other downstream 1507755 16542942 ~ 16545854 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other downstream 1583859 16619046 ~ 16623069 (+)

Expression


Co-expression Network