G3800


Basic Information

Item Value
gene id G3800
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 15120734 ~ 15134707 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU5093
ggggggtggggggGCGGATAAAAATCCTACAGTTTGTACCTATTTGTAAGGCCTGGATCTTTGACCTGCTGCCTCTAGTCTAAGCTCACACCATCAGAGGCATGTTCTCCAGCTCCTTAGGATCTATGCAGGAATCTCTGGAGGTAGAGGTCTGCATTGTGACCTGGGCATTCTCTGTACCCATGTTAGTGGTGGGGCAGTGGTGTACGATAGGGTCCTCCACTTCTTCAGGCAACTCGTCGTCCTCCGCGTCGGTCCTGACTTCCTCTAATAGAAGGTTTGTCTCGCATGGTCCTACAATGCCTCCTTCGATAGTTTCAGTGCCCCAGTAGCCAGTTCCGCTCACCAGGTCCACATTACTGCGGGTTGGGCGTCGGGACTGGCACTGCCGCTTCAGGGCAACAACTTTACAGGCCAGAACCATGGTCGATATCAGCAGAATGATGATGAGACCCATAGAAGATAGAGCCACTATGAACGCCAGTTGAGGGTCAATTAAGCATACTGGTGTGCTGCCGTTTGTAGGAGATACGCTGACTGGAATTTCAGTCAGGTTCTCGATATCATCTGTGAAATGTGTGCTGCTCTGTTGAAAACCTGTTGTAAAGCTTGTGGTGGACTCCATGCCTGTTTCAATGTggagaaacaagaaacaaattaGTGTAGGCTAGTGATTTTATTTACGTGTTTTAGTTTGGTGGATAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5093 True 708 lncRNA 0.56 2 15120734 15134707

Neighbor

gene id symbol gene type direction distance location
LOC103021895 NA coding upstream 54517 15051474 ~ 15066217 (+)
LOC103047124 ksr1 coding upstream 87075 14972989 ~ 15033659 (+)
wsb1 wsb1,LOC107756317,LOC107587373,LOC107682796,LOC107746651 coding upstream 165390 14940680 ~ 14955344 (+)
LOC103046311 cuedc1,cuedc1b,LOC107672109,LOC107587359,LOC107757269 coding upstream 181900 14906783 ~ 14938834 (+)
LOC103046009 vezf1b,LOC108425912,LOC107756309,LOC107587351,LOC107682824,LOC107672112,LOC108435808 coding upstream 217237 14887299 ~ 14903497 (+)
akap1 akap1b,akap1 coding downstream 32753 15167460 ~ 15186395 (+)
LOC103023867 msi2b,msi2,LOC108425902,LOC107587484,LOC107682662,LOC108277875,LOC108435815,LOC105028669,LOC106603292 coding downstream 76950 15211657 ~ 15617787 (+)
LOC103029544 NA coding downstream 574773 15709480 ~ 15729311 (+)
LOC111192347 NA coding downstream 596772 15731479 ~ 15774952 (+)
LOC103028185 NA coding downstream 598580 15733287 ~ 15762061 (+)
G3794 NA non-coding upstream 50932 15069430 ~ 15069802 (+)
trnae-uuc_1 NA non-coding upstream 74350 15046313 ~ 15046384 (+)
G3788 NA non-coding upstream 84152 15035942 ~ 15036582 (+)
G3787 NA non-coding upstream 85547 15034766 ~ 15035187 (+)
G3648 eml2,LOC108277999 non-coding upstream 526675 14592933 ~ 14594059 (+)
G3816 NA non-coding downstream 120750 15255457 ~ 15255899 (+)
G3825 NA non-coding downstream 153887 15288594 ~ 15290389 (+)
G3840 NA non-coding downstream 239924 15374631 ~ 15375643 (+)
G3855 NA non-coding downstream 401783 15536490 ~ 15537243 (+)
G3808 NA non-coding downstream 482411 15617118 ~ 15619171 (+)
G3790 NA other upstream 81820 15038555 ~ 15038914 (+)
G3736 NA other upstream 157151 14961173 ~ 14963583 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other upstream 275108 14840293 ~ 14845626 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other upstream 615719 14444558 ~ 14505015 (+)
LOC103035587 NA other upstream 876354 14217807 ~ 14244380 (+)
LOC103040601 NA other downstream 646931 15781638 ~ 15826103 (+)
G4221 NA other downstream 1408235 16542942 ~ 16545854 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other downstream 1484339 16619046 ~ 16623069 (+)
LOC103039709 NA other downstream 2875471 18010178 ~ 18012103 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other downstream 2906582 18041289 ~ 18422356 (+)

Expression


Co-expression Network