G3648 (eml2,LOC108277999)


Basic Information

Item Value
gene id G3648
gene name eml2,LOC108277999
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14592933 ~ 14594059 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU4876
TCCACGTCCTCTTCAAATTATTGGACCCTTCATCCAGCAACGCAAGGTTATCAGGCACAGGAAACAGTAGAAATGAACCACTGACACTGGAATAGTGTGAGTACAGTAGAAAGTTTATTAACAAAATGAAGGCAAAGCACAGCTTAAGTTCAATCCTAGCTATCGGTGAAGAGCTAAGTGCCAAATTACCACCACATAAGTCCCAAATCACATGTCCACACAGTGACTGCATAATATATAAGGGTATATTCCTCTATGGGCTTTCGCAACACGAACAGCAGTTAAAACTCTTtaaataggtttaaataggcTGCACACAGTTAGGGGACATGACTCTTCGCTTTCAGCGCAGTTTCCATCAGTGGCGCATTAGCATGATGCACAATACATTTCAGGCAAGGATCAGCTCGTAAGTAGTGATCTAGGATCAGTCTCCTCACTTTATACTTTCATACATCGGAAAgttaagaagaaaaagaaaataaaaagactgGTCCCAGACCAGCACTTAAGGTCACTCGCTttataacatacagtatattggtACAGTAGACTACAGACAGGACAGTATGGCTGCAGGGTAGGCACACCAGTGCTGCCCTCTAGTGGGCAGGAGGCTACAGTAAATAAGCAGCAGGTTTGATCAGGCATTAACTTCAGGCCAGTGCCCACTGAAGGATGCTGGTGTCCTTCCCTCCAGTAGAGATGAGGTGACTATTGTCATGGAGAAAGGCAACGTTGGTCACATGGCTGCTGTGTCCACCATATACATGACTGGGTGCCCTTGGCTGAGAACAGGGGTAAGAGAACAAGTGCACTTTGCCGAAATCATCGCCTGCGGCCAGCACACCACGGTCATTTGACCTGCAAACAGCATTGATGTCGGTGCCATCAGCACCGTCTGGCCAGATGCCTAGCAACATGAGATGGAGAAAAATATTTTCACAATTACAGCACAGGTAAAGATTTCAGGATAAACTTTAAAAGCGCAAGATCATTTATAAGGAGAAATGAACATTTCT

Function

symbol description
eml2 Predicted to enable microtubule binding activity. Predicted to be involved in microtubule cytoskeleton organization. Predicted to colocalize with mitotic spindle. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; hatching gland; lens placode; and nervous system. Orthologous to human EML2 (EMAP like 2).

NR:

description
echinoderm microtubule-associated protein-like 2 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4876 True 1022 lncRNA 0.49 2 14592933 14594059

Neighbor

gene id symbol gene type direction distance location
ankrd13b ankrd13b coding upstream 265814 14283621 ~ 14327119 (+)
LOC103039353 LOC108440382 coding upstream 379619 14172064 ~ 14213314 (+)
LOC103043284 tspan13 coding upstream 871868 13715172 ~ 13721065 (+)
scarf1 NA coding upstream 888511 13692166 ~ 13704422 (+)
LOC103044209 rilp coding upstream 901042 13678669 ~ 13691891 (+)
LOC103041611 gipr,LOC107714193,LOC107548593,LOC107756746,LOC107685094,LOC106580753 coding downstream 77453 14671512 ~ 14705719 (+)
clip3 clip3,LOC107714192,LOC107685098,LOC107548591,LOC107669746 coding downstream 137048 14731107 ~ 14753636 (+)
LOC103042749 NA coding downstream 172755 14766814 ~ 14802961 (+)
LOC103043061 LOC108425915 coding downstream 221495 14815554 ~ 14822099 (+)
LOC103043366 LOC108425806 coding downstream 253124 14847183 ~ 14859409 (+)
G3575 NA non-coding upstream 80144 14511140 ~ 14512789 (+)
G3537 NA non-coding upstream 121181 14312208 ~ 14471752 (+)
G3561 blmh,LOC107743628 non-coding upstream 157352 14414289 ~ 14435581 (+)
LOC111190477 NA non-coding upstream 223826 14364465 ~ 14369107 (+)
LOC111190024 NA non-coding upstream 337296 14249843 ~ 14255637 (+)
G3787 NA non-coding downstream 440707 15034766 ~ 15035187 (+)
G3788 NA non-coding downstream 441883 15035942 ~ 15036582 (+)
trnae-uuc_1 NA non-coding downstream 452254 15046313 ~ 15046384 (+)
G3794 NA non-coding downstream 475371 15069430 ~ 15069802 (+)
G3800 NA non-coding downstream 526675 15120734 ~ 15134707 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other upstream 87918 14444558 ~ 14505015 (+)
LOC103035587 NA other upstream 348553 14217807 ~ 14244380 (+)
G3313 sept5b,LOC108425237 other upstream 1608664 12982625 ~ 12984269 (+)
G3096 NA other upstream 2665683 11924450 ~ 11927250 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 3168482 11405543 ~ 11424451 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 246234 14840293 ~ 14845626 (+)
G3736 NA other downstream 367114 14961173 ~ 14963583 (+)
G3790 NA other downstream 444496 15038555 ~ 15038914 (+)
LOC103023550 nf1 other downstream 478781 15072840 ~ 15162956 (+)
LOC103040601 NA other downstream 1187579 15781638 ~ 15826103 (+)

Expression


Co-expression Network